SLC1A7, chr1:53552855-53608289 +/- 50000 base pairs
View on:

Most significant meta-analysis in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs79901635 chr1:53639682 CPT2 [-22419bp] C - 9 T vs. C 0.025 (T) - >1 (-) 0 (-) <1.00e-04

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs61768150 chr1:53598015 SLC1A7 C - 13 A vs. G 0.158 (A) 0.283 (A) <1 (-) 50 (-) >0.05
rs12143903 chr1:53616509 SLC1A7 [+8220bp] C - 13 A vs. C 0.283 (A) 0.275 (A) >1 (-) 0 (-) >0.05
rs6696614 chr1:53613907 SLC1A7 [+5618bp] C - 13 A vs. T 0.283 (T) 0.283 (T) <1 (-) 0 (-) >0.05
rs1288357 chr1:53598161 SLC1A7 C - 13 A vs. G 0.083 (A) 0.0 (A) >1 (-) 0 (-) >0.05
rs4431784 chr1:53520889 SCP2 [+3514bp] C - 13 T vs. G - - <1 (-) 0 (-) >0.05
rs3766808 chr1:53595729 SLC1A7 C - 13 T vs. C 0.158 (T) 0.292 (T) <1 (-) 52 (-) >0.05
rs1288404 chr1:53557484 SLC1A7 C - 13 T vs. C 0.275 (T) 0.275 (T) >1 (-) 8 (-) >0.05
rs72670879 chr1:53596130 SLC1A7 C - 13 A vs. G 0.167 (A) - <1 (-) 51 (-) >0.05
rs899973 chr1:53548295 PODN C - 13 C vs. G 0.3 (C) 0.3 (G) >1 (-) 0 (-) >0.05
rs55898414 chr1:53562089 SLC1A7 C - 9 T vs. C 0.025 (T) - >1 (-) 0 (-) >0.05
rs1288399 chr1:53553485 SLC1A7 C - 13 A vs. G 0.275 (A) 0.258 (A) >1 (-) 8 (-) >0.05
rs56047272 chr1:53598989 SLC1A7 C - 13 A vs. G 0.083 (A) - >1 (-) 0 (-) >0.05
chr1:53582502 chr1:53582502 SLC1A7 C - 5 T vs. C - - <1 (-) 19 (-) >0.05
rs7526732 chr1:53658178 CPT2 [-3923bp] C - 13 A vs. G 0.467 (A) 0.2 (G) <1 (-) 0 (-) >0.05
rs3766785 chr1:53582306 SLC1A7 C - 13 A vs. T 0.233 (T) 0.258 (T) >1 (-) 57 (-) >0.05
rs2404210 chr1:53603796 SLC1A7 C - 13 A vs. G 0.283 (A) 0.283 (A) >1 (-) 0 (-) >0.05
rs1288401 chr1:53553754 SLC1A7 C - 13 T vs. C 0.317 (T) 0.3 (C) >1 (-) 0 (-) >0.05
rs6704459 chr1:53643199 CPT2 [-18902bp] C - 13 C vs. G 0.483 (C) 0.133 (C) <1 (-) 20 (-) >0.05
rs12745290 chr1:53643887 CPT2 [-18214bp] C - 13 T vs. C - - <1 (-) 21 (-) >0.05
rs17107831 chr1:53535499 PODN C - 13 T vs. C 0.05 (T) 0.033 (T) <1 (-) 0 (-) >0.05
rs35352664 chr1:53628658 SLC1A7 [+20369bp] C - 13 A vs. G 0.267 (A) 0.292 (A) >1 (-) 0 (-) >0.05
rs149886197 chr1:53621977 SLC1A7 [+13688bp] C - 6 T vs. C - - <1 (-) 11 (-) >0.05
rs1288397 chr1:53551293 PODN [+119bp] C - 12 A vs. G 0.317 (G) 0.125 (G) >1 (-) 0 (-) >0.05
rs3737989 chr1:53600078 SLC1A7 C - 13 A vs. G 0.158 (G) 0.283 (G) >1 (-) 52 (-) >0.05
rs34866302 chr1:53601803 SLC1A7 C - 13 T vs. C 0.275 (T) 0.267 (T) >1 (-) 0 (-) >0.05
rs3766775 chr1:53567546 SLC1A7 C - 13 A vs. G 0.308 (A) 0.292 (G) >1 (-) 0 (-) >0.05
rs1679941 chr1:53614976 SLC1A7 [+6687bp] C - 13 A vs. G 0.45 (G) 0.392 (A) <1 (-) 0 (-) >0.05
rs7519017 chr1:53510925 SCP2 C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs12566930 chr1:53644258 CPT2 [-17843bp] C - 13 A vs. G 0.483 (A) 0.133 (A) <1 (-) 21 (-) >0.05
rs998296 chr1:53523963 PODN [-3891bp] C - 13 A vs. G 0.017 (A) 0.075 (A) >1 (-) 0 (-) >0.05
rs3766793 chr1:53590630 SLC1A7 C - 13 T vs. C 0.108 (C) 0.233 (C) <1 (-) 4 (-) >0.05
rs78751306 chr1:53559846 SLC1A7 C - 13 A vs. G 0.033 (A) 0.175 (A) >1 (-) 0 (-) >0.05
rs74082418 chr1:53536111 PODN C - 4 T vs. C - - >1 (-) 0 (-) >0.05
rs1288354 chr1:53600350 SLC1A7 C - 13 A vs. G 0.092 (A) 0.0 (A) >1 (-) 0 (-) >0.05
rs75166253 chr1:53540071 PODN C - 13 T vs. G - 0.208 (G) >1 (-) 5 (-) >0.05
rs1077466 chr1:53542620 PODN C - 13 A vs. G - 0.208 (A) <1 (-) 0 (-) >0.05
rs11588325 chr1:53557944 SLC1A7 C - 13 T vs. C 0.033 (T) - <1 (-) 0 (-) >0.05
rs1288398 chr1:53552319 SLC1A7 [-536bp] C - 13 T vs. C 0.342 (C) 0.3 (T) <1 (-) 0 (-) >0.05
rs6694494 chr1:53528264 PODN C - 9 A vs. C - 0.083 (A) >1 (-) 0 (-) >0.05
rs6588467 chr1:53630304 SLC1A7 [+22015bp] C - 13 A vs. G 0.433 (A) 0.375 (G) >1 (-) 0 (-) >0.05
rs115075212 chr1:53605794 SLC1A7 C - 9 A vs. G 0.017 (G) - <1 (-) 4 (-) >0.05
rs13496 chr1:53516742 SCP2 C - 13 A vs. G 0.067 (A) 0.375 (A) >1 (-) 0 (-) >0.05
rs3820201 chr1:53581670 SLC1A7 C - 13 A vs. G 0.358 (G) 0.092 (A) >1 (-) 27 (-) >0.05
rs965097 chr1:53525266 PODN [-2588bp] C - 13 A vs. C 0.067 (C) 0.367 (C) <1 (-) 0 (-) >0.05
rs1628297 chr1:53614880 SLC1A7 [+6591bp] C - 13 T vs. C 0.45 (C) 0.392 (T) <1 (-) 0 (-) >0.05
rs17107710 chr1:53502973 SCP2 C - 13 T vs. G 0.067 (G) 0.367 (G) <1 (-) 0 (-) >0.05
rs60885959 chr1:53519530 SCP2 [+2155bp] C - 13 A vs. G 0.025 (A) 0.067 (A) >1 (-) 0 (-) >0.05
rs60961888 chr1:53557976 SLC1A7 C - 13 T vs. C 0.033 (T) 0.192 (T) >1 (-) 0 (-) >0.05
rs17107989 chr1:53573364 SLC1A7 C - 10 T vs. C - - >1 (-) 6 (-) >0.05
rs74084148 chr1:53556625 SLC1A7 C - 13 T vs. C - 0.033 (T) <1 (-) 0 (-) >0.05

These results originate from GWAS-only meta-analyses for which no additional data can be shared publicly. See Methods for further details.