SLC1A7, chr1:53552855-53608289 +/- 50000 base pairs
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Most significant meta-analysis in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs79901635 chr1:53639682 CPT2 [-22419bp] C - 9 T vs. C 0.025 (T) - >1 (-) 0 (-) <1.00e-04

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6665477 chr1:53627891 SLC1A7 [+19602bp] C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs7543151 chr1:53510038 SCP2 C - 13 A vs. G - 0.092 (A) >1 (-) 18 (-) >0.05
rs36038245 chr1:53628911 SLC1A7 [+20622bp] C - 13 T vs. C 0.267 (C) 0.275 (C) <1 (-) 0 (-) >0.05
rs74224013 chr1:53570972 SLC1A7 C - 13 A vs. C 0.033 (C) 0.167 (C) <1 (-) 0 (-) >0.05
rs11582599 chr1:53586225 SLC1A7 C - 9 T vs. C 0.033 (T) - >1 (-) 0 (-) >0.05
rs2929074 chr1:53654573 CPT2 [-7528bp] C - 3 A vs. C - - >1 (-) 66 (-) >0.05
rs12094460 chr1:53506855 SCP2 C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs17107864 chr1:53544807 PODN C - 13 T vs. C 0.033 (T) 0.233 (T) >1 (-) 0 (-) >0.05
rs11665762 chr1:53634640 SLC1A7 [+26351bp] C - 3 A vs. G - - >1 (-) 0 (-) >0.05
rs28476576 chr1:53505596 SCP2 C - 13 A vs. G 0.092 (G) 0.4 (G) <1 (-) 0 (-) >0.05
rs151319960 chr1:53573715 SLC1A7 C - 10 A vs. C - - >1 (-) 6 (-) >0.05
rs74085595 chr1:53573809 SLC1A7 C - 10 A vs. C - - <1 (-) 6 (-) >0.05
rs61355531 chr1:53505072 SCP2 C - 13 A vs. T 0.025 (T) 0.267 (T) <1 (-) 0 (-) >0.05
rs80069702 chr1:53513022 SCP2 C - 13 A vs. G 0.017 (A) - >1 (-) 0 (-) >0.05
rs61769580 chr1:53636595 CPT2 [-25506bp] C - 10 C vs. G - - >1 (-) 45 (-) >0.05
rs17107720 chr1:53506670 SCP2 C - 13 A vs. C 0.033 (C) 0.283 (C) <1 (-) 0 (-) >0.05
rs114425679 chr1:53639765 CPT2 [-22336bp] C - 10 A vs. C 0.017 (C) 0.025 (C) <1 (-) 45 (-) >0.05
rs76990261 chr1:53556695 SLC1A7 C - 13 A vs. C 0.033 (C) - <1 (-) 0 (-) >0.05
rs56943571 chr1:53505568 SCP2 C - 13 A vs. G 0.033 (A) 0.283 (A) >1 (-) 0 (-) >0.05
rs4926586 chr1:53576030 SLC1A7 C - 12 A vs. C 0.275 (A) - >1 (-) 17 (-) >0.05
rs59798079 chr1:53519508 SCP2 [+2133bp] C - 13 T vs. C 0.058 (T) 0.108 (T) >1 (-) 5 (-) >0.05
rs1679938 chr1:53574076 SLC1A7 C - 13 A vs. G 0.283 (G) 0.258 (A) <1 (-) 0 (-) >0.05
rs114618621 chr1:53556122 SLC1A7 C - 13 T vs. C 0.033 (T) - >1 (-) 0 (-) >0.05
rs75674851 chr1:53510237 SCP2 C - 13 A vs. G 0.033 (A) 0.283 (A) >1 (-) 0 (-) >0.05
rs78624382 chr1:53547188 PODN C - 13 T vs. G 0.033 (T) 0.233 (T) >1 (-) 0 (-) >0.05
rs6588459 chr1:53511094 SCP2 C - 12 T vs. C 0.058 (T) 0.117 (T) >1 (-) 3 (-) >0.05
rs6588458 chr1:53510975 SCP2 C - 13 A vs. G 0.092 (A) 0.392 (A) >1 (-) 0 (-) >0.05
rs6421491 chr1:53511321 SCP2 C - 13 A vs. G 0.058 (G) 0.1 (G) <1 (-) 7 (-) >0.05
rs57751940 chr1:53654167 CPT2 [-7934bp] C - 11 T vs. G 0.017 (T) 0.467 (T) >1 (-) 48 (-) >0.05
rs7533010 chr1:53510119 SCP2 C - 13 A vs. T - 0.083 (T) <1 (-) 15 (-) >0.05
rs12094847 chr1:53517401 SCP2 [+26bp] C - 13 T vs. C 0.025 (C) - <1 (-) 0 (-) >0.05
rs11206078 chr1:53511764 SCP2 C - 13 T vs. G 0.058 (T) 0.333 (T) >1 (-) 0 (-) >0.05
rs10888763 chr1:53519270 SCP2 [+1895bp] C - 13 T vs. C 0.092 (T) 0.4 (T) >1 (-) 11 (-) >0.05
rs60990405 chr1:53509589 SCP2 C - 13 T vs. C 0.025 (T) 0.083 (T) >1 (-) 16 (-) >0.05
rs60426629 chr1:53509581 SCP2 C - 13 A vs. G 0.033 (A) 0.083 (A) >1 (-) 16 (-) >0.05
rs874349 chr1:53631902 SLC1A7 [+23613bp] C - 12 T vs. C 0.267 (T) 0.292 (T) >1 (-) 0 (-) >0.05
rs6682799 chr1:53507681 SCP2 C - 13 A vs. G 0.025 (A) 0.067 (A) >1 (-) 16 (-) >0.05
rs17367892 chr1:53534524 PODN C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs6670842 chr1:53512941 SCP2 C - 13 A vs. G 0.092 (G) 0.4 (G) <1 (-) 1 (-) >0.05
rs6588457 chr1:53510937 SCP2 C - 13 A vs. G 0.033 (G) 0.075 (G) <1 (-) 14 (-) >0.05
rs6588456 chr1:53508707 SCP2 C - 13 T vs. C 0.033 (T) 0.083 (T) >1 (-) 16 (-) >0.05
rs7533000 chr1:53510085 SCP2 C - 13 A vs. G 0.033 (G) 0.092 (G) <1 (-) 15 (-) >0.05
rs2282340 chr1:53551065 PODN C - 13 A vs. G 0.033 (A) 0.233 (A) >1 (-) 0 (-) >0.05
rs7542983 chr1:53509852 SCP2 C - 13 C vs. G - - >1 (-) 15 (-) >0.05
rs72903198 chr1:53505807 SCP2 C - 13 T vs. C 0.033 (T) 0.083 (T) >1 (-) 16 (-) >0.05
rs7520302 chr1:53506250 SCP2 C - 13 A vs. G 0.017 (G) - <1 (-) 16 (-) >0.05
rs7535299 chr1:53509949 SCP2 C - 13 T vs. G - - <1 (-) 15 (-) >0.05
rs72903196 chr1:53505490 SCP2 C - 13 A vs. G 0.033 (G) 0.083 (G) <1 (-) 16 (-) >0.05
rs72903191 chr1:53504307 SCP2 C - 13 A vs. G 0.025 (A) 0.075 (A) >1 (-) 16 (-) >0.05
rs72903194 chr1:53505358 SCP2 C - 13 A vs. G 0.033 (A) 0.083 (A) >1 (-) 16 (-) >0.05

These results originate from GWAS-only meta-analyses for which no additional data can be shared publicly. See Methods for further details.