SLC25A39, chr17:42396993-42402238 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs5910 chr17:42449789 ITGA2B All: C 105,041 14 A vs. G 0.333 (A) 0.35 (A) 1.08 (1.05-1.12) 0 (0-44) 2.51e-06
Meta_image?name=rs5910

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs5910 chr17:42449789 ITGA2B All: C 105,041 14 A vs. G 0.333 (A) 0.35 (A) 1.08 (1.05-1.12) 0 (0-44) 2.51e-06
rs850733 chr17:42451305 ITGA2B All: C 105,041 14 G vs. A - - 0.92 (0.89-0.95) 0 (0-42) 3.00e-06
rs708382 chr17:42442344 FAM171A2 [+1101bp] All: C 105,041 14 C vs. T 0.375 (C) 0.358 (C) 1.08 (1.05-1.11) 0 (0-39) 3.07e-06
rs850737 chr17:42443784 FAM171A2 [+2541bp] All: C 103,437 13 C vs. T 0.375 (C) 0.358 (C) 1.08 (1.05-1.12) 0 (0-44) 3.41e-06
rs850738 chr17:42434630 FAM171A2 All: C 105,041 14 A vs. G - - 0.92 (0.89-0.96) 0 (0-39) 7.00e-06
rs5848 chr17:42430244 GRN All: C 105,041 14 T vs. C 0.192 (T) 0.225 (T) 1.10 (1.05-1.15) 0 (0-47) 9.24e-06
rs708383 chr17:42437754 FAM171A2 All: C 105,041 14 A vs. G 0.333 (A) 0.3 (A) 1.07 (1.04-1.11) 0 (0-39) 1.35e-05
rs708384 chr17:42437682 FAM171A2 All: C 105,041 14 A vs. C 0.333 (A) 0.292 (A) 1.07 (1.04-1.11) 0 (0-39) 1.42e-05
rs850734 chr17:42449025 ITGA2B [-523bp] C - 12 C vs. G 0.317 (G) 0.367 (G) <1 (-) 0 (-) <0.05
rs72824731 chr17:42420592 GRN [-2022bp] C - 13 C vs. G 0.075 (C) 0.017 (C) <1 (-) 0 (-) <0.05
rs850736 chr17:42446420 ITGA2B [-3128bp] C - 12 C vs. G - - >1 (-) 0 (-) <0.05
rs77399433 chr17:42411269 SLC25A39 [+9031bp] C - 11 T vs. C 0.025 (T) 0.017 (T) <1 (-) 0 (-) <0.05
rs72824734 chr17:42423844 GRN C - 13 T vs. G 0.05 (G) - >1 (-) 0 (-) <0.05
rs149740889 chr17:42396671 SLC25A39 [-322bp] C - 13 T vs. C - - >1 (-) 0 (-) <0.05
rs148804656 chr17:42414944 GRN [-7670bp] C - 10 T vs. C - - <1 (-) 0 (-) <0.05
rs116853426 chr17:42385645 RUNDC3A [-136bp] C - 13 A vs. G 0.075 (A) - <1 (-) 0 (-) <0.05
rs62081185 chr17:42351761 SLC4A1 [+6252bp] C - 12 T vs. G 0.142 (T) - >1 (-) 0 (-) <0.05
rs72824718 chr17:42373339 RNU6-453P [-11117bp] C - 12 T vs. C 0.033 (T) - <1 (-) 0 (-) <0.05
rs17193431 chr17:42420791 GRN [-1823bp] C - 13 T vs. C 0.05 (C) - >1 (-) 0 (-) <0.05
rs146364320 chr17:42425114 GRN C - 13 C vs. G - - <1 (-) 0 (-) <0.05
rs72824716 chr17:42371311 RNU6-453P [-13145bp] C - 12 A vs. G 0.033 (A) - <1 (-) 0 (-) <0.05
rs76875384 chr17:42373543 RNU6-453P [-10913bp] C - 12 T vs. C 0.033 (C) - >1 (-) 0 (-) <0.05
rs72824730 chr17:42420542 GRN [-2072bp] C - 13 A vs. G 0.05 (A) - <1 (-) 0 (-) <0.05
rs78403836 chr17:42426206 GRN C - 13 C vs. G 0.058 (G) - >1 (-) 5 (-) <0.05
rs72824732 chr17:42420650 GRN [-1964bp] C - 13 T vs. C 0.05 (T) - <1 (-) 0 (-) <0.05
rs72824714 chr17:42369725 RNU6-453P [-14731bp] C - 12 A vs. G 0.033 (A) - <1 (-) 0 (-) <0.05
rs117384166 chr17:42419785 GRN [-2829bp] C - 13 A vs. G 0.05 (G) - >1 (-) 0 (-) <0.05
rs117748181 chr17:42419045 GRN [-3569bp] C - 13 T vs. G 0.05 (T) - <1 (-) 0 (-) <0.05
rs141190894 chr17:42419844 GRN [-2770bp] C - 13 C vs. G - - >1 (-) 0 (-) <0.05
rs72824723 chr17:42381455 RNU6-453P [-3001bp] C - 13 A vs. G 0.05 (A) - <1 (-) 0 (-) <0.05
rs72824724 chr17:42389814 RUNDC3A C - 13 T vs. C 0.05 (T) - <1 (-) 0 (-) <0.05
rs146658412 chr17:42392440 RUNDC3A C - 13 T vs. C - - <1 (-) 0 (-) <0.05
rs118117997 chr17:42378340 RNU6-453P [-6116bp] C - 13 A vs. C 0.042 (C) - >1 (-) 0 (-) <0.05
rs76182364 chr17:42380484 RNU6-453P [-3972bp] C - 13 T vs. G 0.042 (T) - <1 (-) 0 (-) <0.05
rs72824727 chr17:42411101 SLC25A39 [+8863bp] C - 13 T vs. C 0.042 (T) - <1 (-) 0 (-) <0.05
rs72824725 chr17:42401002 SLC25A39 C - 13 A vs. G 0.042 (A) - <1 (-) 0 (-) <0.05
rs72824726 chr17:42410043 SLC25A39 [+7805bp] C - 13 C vs. G - - >1 (-) 0 (-) <0.05
rs850735 chr17:42448180 ITGA2B [-1368bp] C - 12 A vs. G - - <1 (-) 0 (-) <0.05
rs147925000 chr17:42407965 SLC25A39 [+5727bp] C - 13 T vs. G - - <1 (-) 0 (-) <0.05
rs850713 chr17:42427732 GRN C - 11 A vs. G 0.167 (A) 0.342 (A) >1 (-) 0 (-) <0.05
rs71371992 chr17:42417994 GRN [-4620bp] C - 13 T vs. G 0.017 (G) - >1 (-) 0 (-) <0.05
rs34248327 chr17:42372800 RNU6-453P [-11656bp] C - 13 A vs. G 0.025 (A) 0.017 (A) <1 (-) 18 (-) <0.05
rs7209090 chr17:42348725 SLC4A1 [+3216bp] C - 12 T vs. C 0.142 (T) - >1 (-) 0 (-) <0.05
rs72824736 chr17:42428538 GRN C - 10 A vs. G 0.092 (A) - >1 (-) 0 (-) <0.05
rs149727063 chr17:42417426 GRN [-5188bp] C - 13 A vs. G - - <1 (-) 0 (-) <0.05
rs62081183 chr17:42348918 SLC4A1 [+3409bp] C - 12 A vs. G 0.133 (G) - <1 (-) 0 (-) <0.05
rs145747717 chr17:42374900 RNU6-453P [-9556bp] C - 13 C vs. G - - <1 (-) 17 (-) <0.05
rs146274086 chr17:42401285 SLC25A39 C - 12 A vs. G - - <1 (-) 8 (-) >0.05
rs62081182 chr17:42347740 SLC4A1 [+2231bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs45581134 chr17:42347189 SLC4A1 [+1680bp] C - 12 T vs. C 0.142 (T) 0.083 (T) >1 (-) 0 (-) >0.05

Association studies for this region [+]