SLC25A39, chr17:42396993-42402238 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs5910 chr17:42449789 ITGA2B All: C 105,041 14 A vs. G 0.333 (A) 0.35 (A) 1.08 (1.05-1.12) 0 (0-44) 2.51e-06
Meta_image?name=rs5910

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs76374005 chr17:42386662 RUNDC3A C - 11 T vs. G 0.075 (T) - >1 (-) 0 (-) >0.05
rs2879096 chr17:42423556 GRN C - 13 T vs. C 0.267 (T) 0.417 (C) >1 (-) 6 (-) >0.05
rs71371987 chr17:42399510 SLC25A39 C - 12 T vs. C - 0.017 (T) <1 (-) 9 (-) >0.05
rs72628317 chr17:42414145 GRN [-8469bp] C - 12 T vs. C 0.033 (T) 0.25 (T) <1 (-) 0 (-) >0.05
rs116230483 chr17:42374964 RNU6-453P [-9492bp] C - 12 T vs. C 0.017 (T) - <1 (-) 22 (-) >0.05
rs7215881 chr17:42374666 RNU6-453P [-9790bp] C - 12 T vs. C 0.025 (T) 0.017 (T) <1 (-) 22 (-) >0.05
rs35603080 chr17:42372771 RNU6-453P [-11685bp] C - 12 A vs. G 0.025 (G) 0.017 (G) >1 (-) 23 (-) >0.05
rs35681691 chr17:42373071 RNU6-453P [-11385bp] C - 12 T vs. C 0.017 (T) - <1 (-) 23 (-) >0.05
rs34091343 chr17:42374151 RNU6-453P [-10305bp] C - 12 A vs. G 0.025 (G) - >1 (-) 23 (-) >0.05
rs71371984 chr17:42373329 RNU6-453P [-11127bp] C - 12 A vs. G - - >1 (-) 23 (-) >0.05
rs4793089 chr17:42381952 RNU6-453P [-2504bp] C - 13 A vs. G - - >1 (-) 19 (-) >0.05
rs3785817 chr17:42423665 GRN C - 13 A vs. G 0.275 (G) 0.417 (A) <1 (-) 12 (-) >0.05
rs12942600 chr17:42399754 SLC25A39 C - 12 T vs. C - - <1 (-) 10 (-) >0.05
rs34365655 chr17:42398802 SLC25A39 C - 11 A vs. G 0.083 (A) - >1 (-) 0 (-) >0.05
rs35941271 chr17:42436220 FAM171A2 C - 11 A vs. G 0.042 (A) 0.075 (A) >1 (-) 0 (-) >0.05
rs1811182 chr17:42373971 RNU6-453P [-10485bp] C - 13 C vs. G - - >1 (-) 13 (-) >0.05
rs112153156 chr17:42399223 SLC25A39 C - 12 T vs. C 0.025 (T) - <1 (-) 12 (-) >0.05
rs117222712 chr17:42421612 GRN [-1002bp] C - 12 A vs. G 0.025 (G) - >1 (-) 0 (-) >0.05
rs117432945 chr17:42447569 ITGA2B [-1979bp] C - 12 T vs. C 0.033 (T) - <1 (-) 35 (-) >0.05
rs116934302 chr17:42388322 RUNDC3A C - 12 T vs. C 0.025 (T) 0.017 (T) <1 (-) 21 (-) >0.05
rs116934410 chr17:42398157 SLC25A39 C - 12 T vs. C - 0.017 (T) <1 (-) 20 (-) >0.05
rs147818740 chr17:42386812 RUNDC3A C - 12 A vs. G - - >1 (-) 21 (-) >0.05
rs117617473 chr17:42371414 RNU6-453P [-13042bp] C - 12 T vs. C 0.025 (T) 0.017 (T) <1 (-) 20 (-) >0.05
rs143631282 chr17:42381794 RNU6-453P [-2662bp] C - 12 A vs. G - - <1 (-) 21 (-) >0.05
rs35716302 chr17:42370676 RNU6-453P [-13780bp] C - 12 A vs. T 0.017 (T) 0.017 (T) >1 (-) 21 (-) >0.05
rs117746658 chr17:42353385 SLC4A1 [+7876bp] C - 10 T vs. C 0.058 (T) - <1 (-) 0 (-) >0.05
rs12602832 chr17:42396896 SLC25A39 [-97bp] C - 11 T vs. C 0.067 (T) 0.025 (T) >1 (-) 0 (-) >0.05
rs1961169 chr17:42375242 RNU6-453P [-9214bp] C - 11 A vs. G - - <1 (-) 27 (-) >0.05
rs71371982 chr17:42370216 RNU6-453P [-14240bp] C - 12 A vs. G 0.033 (A) 0.017 (A) <1 (-) 8 (-) >0.05
rs71371983 chr17:42370233 RNU6-453P [-14223bp] C - 12 T vs. C 0.033 (C) 0.017 (C) >1 (-) 8 (-) >0.05
rs71371981 chr17:42370068 RNU6-453P [-14388bp] C - 12 C vs. G 0.008 (C) - <1 (-) 8 (-) >0.05
rs71371993 chr17:42437000 FAM171A2 C - 9 A vs. G 0.042 (A) - >1 (-) 0 (-) >0.05
rs11804694 chr17:42447143 ITGA2B [-2405bp] C - 13 C vs. G - - <1 (-) 14 (-) >0.05
rs114641762 chr17:42417164 GRN [-5450bp] C - 11 A vs. C 0.142 (A) - >1 (-) 0 (-) >0.05
rs7222401 chr17:42348066 SLC4A1 [+2557bp] C - 9 A vs. G - - <1 (-) 0 (-) >0.05
rs7208864 chr17:42348069 SLC4A1 [+2560bp] C - 10 A vs. T - - <1 (-) 0 (-) >0.05
rs2074104 chr17:42393494 RUNDC3A C - 13 T vs. C 0.275 (T) 0.15 (C) >1 (-) 19 (-) >0.05
rs60776742 chr17:42400816 SLC25A39 C - 13 A vs. C 0.375 (A) - >1 (-) 8 (-) >0.05
rs11578212 chr17:42446855 ITGA2B [-2693bp] C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs45563132 chr17:42347384 SLC4A1 [+1875bp] C - 10 T vs. C 0.05 (T) - <1 (-) 0 (-) >0.05
rs112560326 chr17:42400329 SLC25A39 C - 11 T vs. C 0.042 (T) - <1 (-) 0 (-) >0.05
rs12602541 chr17:42369408 RNU6-453P [-15048bp] C - 10 A vs. G 0.033 (G) 0.275 (G) >1 (-) 11 (-) >0.05
rs12603789 chr17:42396105 RUNDC3A [+66bp] C - 11 T vs. C 0.025 (C) 0.2 (C) >1 (-) 0 (-) >0.05
rs2121597 chr17:42447281 ITGA2B [-2267bp] C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs72628316 chr17:42371127 RNU6-453P [-13329bp] C - 9 A vs. G 0.058 (A) 0.267 (A) <1 (-) 26 (-) >0.05
rs141711348 chr17:42401152 SLC25A39 C - 10 A vs. G - - <1 (-) 0 (-) >0.05
rs143528328 chr17:42375154 RNU6-453P [-9302bp] C - 10 T vs. C - - <1 (-) 11 (-) >0.05
rs8071944 chr17:42418603 GRN [-4011bp] C - 13 T vs. C 0.267 (T) - >1 (-) 20 (-) >0.05
rs138061161 chr17:42372658 RNU6-453P [-11798bp] C - 10 A vs. T - - >1 (-) 11 (-) >0.05
rs146744993 chr17:42397592 SLC25A39 C - 3 A vs. G - - <1 (-) 0 (-) >0.05

Association studies for this region [+]