SLC25A39, chr17:42396993-42402238 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs5910 chr17:42449789 ITGA2B All: C 105,041 14 A vs. G 0.333 (A) 0.35 (A) 1.08 (1.05-1.12) 0 (0-44) 2.51e-06
Meta_image?name=rs5910

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs117705553 chr17:42407359 SLC25A39 [+5121bp] C - 9 T vs. C 0.042 (T) 0.258 (T) <1 (-) 0 (-) >0.05
rs57130611 chr17:42347338 SLC4A1 [+1829bp] C - 10 A vs. G 0.017 (A) 0.442 (A) <1 (-) 0 (-) >0.05
rs4793088 chr17:42380737 RNU6-453P [-3719bp] C - 13 A vs. C 0.292 (C) 0.367 (A) <1 (-) 13 (-) >0.05
rs151328886 chr17:42373952 RNU6-453P [-10504bp] C - 5 T vs. C - - <1 (-) 4 (-) >0.05
rs72628314 chr17:42348356 SLC4A1 [+2847bp] C - 10 A vs. G 0.017 (A) 0.458 (A) <1 (-) 0 (-) >0.05
rs62081186 chr17:42353708 SLC4A1 [+8199bp] C - 12 A vs. C - - >1 (-) 0 (-) >0.05
rs1823857 chr17:42352032 SLC4A1 [+6523bp] C - 10 A vs. C - - <1 (-) 0 (-) >0.05
rs1823854 chr17:42352152 SLC4A1 [+6643bp] C - 10 A vs. G - - <1 (-) 0 (-) >0.05
rs11655476 chr17:42415772 GRN [-6842bp] C - 13 T vs. C 0.317 (T) 0.15 (C) >1 (-) 22 (-) >0.05
rs118020617 chr17:42356624 SLC4A1 [+11115bp] C - 10 A vs. C 0.017 (A) 0.483 (A) <1 (-) 0 (-) >0.05
rs16940591 chr17:42356997 SLC4A1 [+11488bp] C - 10 A vs. T 0.008 (A) 0.483 (A) <1 (-) 0 (-) >0.05
rs9908717 chr17:42362507 SLC4A1 [+16998bp] C - 9 T vs. C 0.017 (T) 0.483 (T) <1 (-) 0 (-) >0.05
rs148868301 chr17:42417823 GRN [-4791bp] C - 8 T vs. C - - >1 (-) 0 (-) >0.05
rs3760365 chr17:42420676 GRN [-1938bp] C - 13 T vs. C 0.342 (T) 0.117 (C) >1 (-) 26 (-) >0.05
rs62081189 chr17:42367215 RNU6-453P [-17241bp] C - 12 T vs. C 0.217 (T) - >1 (-) 0 (-) >0.05
rs59977415 chr17:42420331 GRN [-2283bp] C - 13 T vs. C 0.333 (T) 0.117 (C) >1 (-) 26 (-) >0.05
rs117431393 chr17:42355095 SLC4A1 [+9586bp] C - 10 A vs. G 0.05 (G) - >1 (-) 0 (-) >0.05
rs62081193 chr17:42419743 GRN [-2871bp] C - 13 A vs. G 0.317 (A) - >1 (-) 28 (-) >0.05
rs148040462 chr17:42444366 FAM171A2 [+3123bp] C - 6 C vs. G - - >1 (-) 0 (-) >0.05
rs7217662 chr17:42361989 SLC4A1 [+16480bp] C - 13 T vs. C 0.383 (C) 0.475 (T) >1 (-) 15 (-) >0.05
rs7217964 chr17:42406873 SLC25A39 [+4635bp] C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs141474650 chr17:42387238 RUNDC3A C - 12 T vs. C - - >1 (-) 32 (-) >0.05
rs850716 chr17:42409556 SLC25A39 [+7318bp] C - 9 T vs. C - - <1 (-) 14 (-) >0.05
rs2879165 chr17:42361360 SLC4A1 [+15851bp] C - 13 T vs. C 0.383 (C) 0.483 (T) >1 (-) 12 (-) >0.05
rs117224935 chr17:42395288 RUNDC3A C - 5 T vs. C 0.008 (T) - <1 (-) 0 (-) >0.05
rs7217936 chr17:42362303 SLC4A1 [+16794bp] C - 13 A vs. G 0.383 (G) 0.417 (A) >1 (-) 13 (-) >0.05
rs8067711 chr17:42366577 RNU6-453P [-17879bp] C - 13 C vs. G 0.4 (G) 0.417 (C) >1 (-) 13 (-) >0.05
rs117639727 chr17:42396106 RUNDC3A [+67bp] C - 12 A vs. G 0.025 (A) - <1 (-) 29 (-) >0.05
rs55896825 chr17:42366503 RNU6-453P [-17953bp] C - 13 T vs. C - - <1 (-) 11 (-) >0.05
rs151053833 chr17:42381921 RNU6-453P [-2535bp] C - 13 T vs. C - - <1 (-) 32 (-) >0.05
rs12939407 chr17:42367997 RNU6-453P [-16459bp] C - 13 A vs. G - - <1 (-) 13 (-) >0.05
rs143955536 chr17:42397878 SLC25A39 C - 7 T vs. C - - >1 (-) 0 (-) >0.05
rs147997011 chr17:42424174 GRN C - 9 A vs. G - - >1 (-) 18 (-) >0.05
rs12939970 chr17:42359778 SLC4A1 [+14269bp] C - 13 T vs. C 0.333 (C) 0.442 (T) >1 (-) 7 (-) >0.05
rs4793095 chr17:42410180 SLC25A39 [+7942bp] C - 13 A vs. G 0.425 (G) 0.108 (A) >1 (-) 0 (-) >0.05
rs140529521 chr17:42434655 FAM171A2 C - 3 T vs. C - - >1 (-) 0 (-) >0.05
rs116938341 chr17:42414689 GRN [-7925bp] C - 12 A vs. C 0.025 (A) - <1 (-) 19 (-) >0.05
rs144441107 chr17:42410811 SLC25A39 [+8573bp] C - 12 A vs. G - - >1 (-) 19 (-) >0.05
rs850719 chr17:42394461 RUNDC3A C - 13 A vs. G - - <1 (-) 24 (-) >0.05
rs11869994 chr17:42360699 SLC4A1 [+15190bp] C - 13 T vs. C - - <1 (-) 4 (-) >0.05
rs111568402 chr17:42439469 FAM171A2 C - 3 A vs. G 0.025 (A) - <1 (-) 0 (-) >0.05
rs56337364 chr17:42362723 SLC4A1 [+17214bp] C - 13 A vs. G 0.367 (A) - <1 (-) 8 (-) >0.05
rs146143489 chr17:42426314 GRN C - 7 T vs. C - - <1 (-) 0 (-) >0.05
rs3859268 chr17:42423263 GRN C - 13 T vs. C 0.35 (T) 0.117 (C) >1 (-) 26 (-) >0.05
rs1059555 chr17:42402119 SLC25A39 C - 13 T vs. C - 0.117 (T) >1 (-) 0 (-) >0.05
rs150833138 chr17:42384237 RNU6-453P [-219bp] C - 4 T vs. C - - <1 (-) 0 (-) >0.05
rs8079946 chr17:42401708 SLC25A39 C - 13 T vs. C 0.417 (C) 0.117 (T) >1 (-) 0 (-) >0.05
rs4792938 chr17:42424599 GRN C - 13 C vs. G 0.367 (C) 0.075 (G) >1 (-) 27 (-) >0.05
rs13309195 chr17:42446955 ITGA2B [-2593bp] C - 8 T vs. C - - <1 (-) 0 (-) >0.05
rs8066400 chr17:42402535 SLC25A39 [+297bp] C - 13 T vs. C - 0.117 (T) >1 (-) 0 (-) >0.05

Association studies for this region [+]