SOCS3, chr17:76352864-76356158 +/- 50000 base pairs
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Most significant meta-analysis in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs34337072 chr17:76372398 PGS1 [-2323bp] C - 13 A vs. G 0.208 (G) - <1 (-) 0 (-) <0.05

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs34337072 chr17:76372398 PGS1 [-2323bp] C - 13 A vs. G 0.208 (G) - <1 (-) 0 (-) <0.05
rs34949061 chr17:76367182 PGS1 [-7539bp] C - 13 A vs. G 0.183 (G) - <1 (-) 0 (-) <0.05
rs4461143 chr17:76374069 PGS1 [-652bp] C - 13 T vs. C 0.2 (T) - >1 (-) 0 (-) <0.05
rs2292645 chr17:76394195 PGS1 C - 13 T vs. C 0.225 (C) 0.183 (C) <1 (-) 0 (-) <0.05
rs11658146 chr17:76404893 PGS1 C - 13 T vs. C 0.217 (T) 0.183 (T) >1 (-) 0 (-) <0.05
rs3744218 chr17:76400251 PGS1 C - 13 C vs. G 0.225 (G) 0.183 (G) <1 (-) 0 (-) <0.05
rs12938284 chr17:76382950 PGS1 C - 13 A vs. C 0.2 (A) - >1 (-) 0 (-) <0.05
rs9901493 chr17:76400507 PGS1 C - 13 A vs. G 0.225 (A) 0.167 (A) >1 (-) 0 (-) <0.05
rs9901724 chr17:76400566 PGS1 C - 13 T vs. G 0.225 (T) 0.158 (T) >1 (-) 0 (-) <0.05
rs9891030 chr17:76397176 PGS1 C - 13 A vs. G 0.225 (A) 0.183 (A) >1 (-) 0 (-) <0.05
rs9900564 chr17:76377458 PGS1 C - 13 A vs. G 0.308 (G) 0.258 (G) <1 (-) 0 (-) <0.05
rs72894710 chr17:76304188 SOCS3 [-48676bp] C - 9 C vs. G 0.075 (G) 0.083 (G) >1 (-) 0 (-) <0.05
rs2090205 chr17:76386274 PGS1 C - 13 A vs. C 0.217 (A) 0.175 (A) >1 (-) 0 (-) <0.05
rs72894713 chr17:76304228 SOCS3 [-48636bp] C - 9 A vs. T 0.058 (A) 0.092 (A) <1 (-) 0 (-) <0.05
rs34309315 chr17:76357892 SOCS3 [+1734bp] C - 12 T vs. C 0.275 (T) 0.25 (C) <1 (-) 0 (-) <0.05
rs79745319 chr17:76392525 PGS1 C - 13 A vs. T 0.142 (T) - <1 (-) 0 (-) <0.05
rs9901475 chr17:76379015 PGS1 C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs57933884 chr17:76342882 SOCS3 [-9982bp] C - 12 A vs. C 0.292 (C) 0.475 (A) >1 (-) 0 (-) >0.05
rs55909538 chr17:76305653 SOCS3 [-47211bp] C - 9 T vs. C 0.033 (T) 0.058 (T) <1 (-) 0 (-) >0.05
rs73998043 chr17:76342989 SOCS3 [-9875bp] C - 12 A vs. G 0.05 (A) - <1 (-) 0 (-) >0.05
rs140089414 chr17:76313328 SOCS3 [-39536bp] C - 10 T vs. C - - <1 (-) 7 (-) >0.05
rs2280148 chr17:76354380 SOCS3 C - 4 T vs. G - 0.175 (G) >1 (-) 17 (-) >0.05
rs17561950 chr17:76392144 PGS1 C - 13 A vs. G 0.475 (G) 0.483 (A) <1 (-) 0 (-) >0.05
rs76923374 chr17:76327005 SOCS3 [-25859bp] C - 8 A vs. G 0.05 (A) - <1 (-) 17 (-) >0.05
rs7219215 chr17:76395169 PGS1 C - 13 T vs. C 0.142 (C) 0.275 (C) >1 (-) 0 (-) >0.05
rs9891614 chr17:76360050 SOCS3 [+3892bp] C - 12 A vs. G 0.342 (G) 0.183 (A) >1 (-) 0 (-) >0.05
rs12452647 chr17:76378917 PGS1 C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs75316409 chr17:76313053 SOCS3 [-39811bp] C - 10 A vs. G 0.025 (A) - >1 (-) 0 (-) >0.05
rs4789024 chr17:76318755 SOCS3 [-34109bp] C - 13 T vs. G 0.325 (T) 0.417 (T) <1 (-) 43 (-) >0.05
rs72911393 chr17:76391005 PGS1 C - 13 T vs. C 0.142 (T) 0.258 (T) <1 (-) 0 (-) >0.05
rs12453219 chr17:76392756 PGS1 C - 13 C vs. G 0.142 (G) 0.258 (G) >1 (-) 0 (-) >0.05
rs67944473 chr17:76314666 SOCS3 [-38198bp] C - 13 T vs. C 0.333 (T) 0.033 (T) >1 (-) 14 (-) >0.05
rs4969172 chr17:76365791 PGS1 [-8930bp] C - 12 T vs. C 0.342 (T) 0.175 (C) <1 (-) 0 (-) >0.05
rs4969170 chr17:76360538 SOCS3 [+4380bp] C - 12 A vs. G 0.342 (A) 0.183 (G) <1 (-) 0 (-) >0.05
rs75599905 chr17:76361175 SOCS3 [+5017bp] C - 9 C vs. G 0.075 (C) - >1 (-) 0 (-) >0.05
rs72911377 chr17:76381463 PGS1 C - 13 A vs. G 0.15 (A) - <1 (-) 0 (-) >0.05
rs56101241 chr17:76403923 PGS1 C - 4 C vs. G - - <1 (-) 43 (-) >0.05
rs7222391 chr17:76326637 SOCS3 [-26227bp] C - 11 A vs. G 0.075 (A) 0.075 (A) <1 (-) 0 (-) >0.05
rs12451056 chr17:76396188 PGS1 C - 13 T vs. C 0.142 (T) 0.283 (T) <1 (-) 0 (-) >0.05
rs6501206 chr17:76364053 SOCS3 [+7895bp] C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs112673856 chr17:76319870 SOCS3 [-32994bp] C - 12 T vs. C - - >1 (-) 18 (-) >0.05
rs4436839 chr17:76324268 SOCS3 [-28596bp] C - 12 T vs. G 0.392 (T) 0.417 (G) >1 (-) 61 (-) >0.05
rs8070204 chr17:76364207 SOCS3 [+8049bp] C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs9747523 chr17:76317419 SOCS3 [-35445bp] C - 13 T vs. G - - >1 (-) 11 (-) >0.05
rs67952818 chr17:76314798 SOCS3 [-38066bp] C - 13 T vs. C 0.325 (T) 0.033 (T) >1 (-) 11 (-) >0.05
rs114571179 chr17:76329742 SOCS3 [-23122bp] C - 7 A vs. G 0.042 (A) - <1 (-) 25 (-) >0.05
rs55831006 chr17:76323392 SOCS3 [-29472bp] C - 10 T vs. G - - <1 (-) 0 (-) >0.05
rs1965410 chr17:76345532 SOCS3 [-7332bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs4969184 chr17:76393413 PGS1 C - 13 A vs. G 0.475 (G) 0.483 (A) <1 (-) 0 (-) >0.05
rs73998044 chr17:76344085 SOCS3 [-8779bp] C - 12 T vs. C 0.067 (T) 0.008 (T) <1 (-) 0 (-) >0.05

These results originate from GWAS-only meta-analyses for which no additional data can be shared publicly. See Methods for further details.