SOCS3, chr17:76352864-76356158 +/- 50000 base pairs
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Most significant meta-analysis in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs34337072 chr17:76372398 PGS1 [-2323bp] C - 13 A vs. G 0.208 (G) - <1 (-) 0 (-) <0.05

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs4969187 chr17:76405837 PGS1 C - 13 T vs. C 0.35 (T) 0.5 (T) >1 (-) 0 (-) >0.05
rs113776314 chr17:76343435 SOCS3 [-9429bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs55944126 chr17:76363624 SOCS3 [+7466bp] C - 13 A vs. G 0.033 (A) 0.1 (A) <1 (-) 0 (-) >0.05
rs4969143 chr17:76405736 PGS1 C - 13 T vs. C 0.342 (T) 0.5 (T) >1 (-) 0 (-) >0.05
rs8074003 chr17:76364493 SOCS3 [+8335bp] C - 13 T vs. C 0.042 (T) 0.108 (T) <1 (-) 0 (-) >0.05
rs55959237 chr17:76364626 SOCS3 [+8468bp] C - 13 T vs. C 0.042 (T) 0.108 (T) <1 (-) 0 (-) >0.05
rs68154225 chr17:76368916 PGS1 [-5805bp] C - 13 C vs. G 0.05 (C) 0.108 (C) <1 (-) 0 (-) >0.05
rs4129767 chr17:76403984 PGS1 C - 13 A vs. G 0.467 (G) 0.483 (A) <1 (-) 0 (-) >0.05
rs56394367 chr17:76363421 SOCS3 [+7263bp] C - 13 C vs. G 0.05 (C) 0.3 (C) <1 (-) 0 (-) >0.05
rs72911386 chr17:76386984 PGS1 C - 13 A vs. T 0.15 (T) 0.283 (T) >1 (-) 0 (-) >0.05
rs6501201 chr17:76334905 SOCS3 [-17959bp] C - 12 T vs. C 0.392 (T) 0.325 (T) <1 (-) 25 (-) >0.05
rs4969142 chr17:76398304 PGS1 C - 13 A vs. G 0.45 (G) 0.492 (A) <1 (-) 0 (-) >0.05
rs141612616 chr17:76395910 PGS1 C - 4 C vs. G - - <1 (-) 0 (-) >0.05
rs55935021 chr17:76366865 PGS1 [-7856bp] C - 13 T vs. G 0.05 (G) 0.117 (G) >1 (-) 0 (-) >0.05
rs9916590 chr17:76363223 SOCS3 [+7065bp] C - 13 A vs. T 0.033 (A) 0.292 (A) <1 (-) 0 (-) >0.05
rs9914196 chr17:76362868 SOCS3 [+6710bp] C - 13 A vs. C 0.05 (A) 0.3 (A) <1 (-) 0 (-) >0.05
rs56203718 chr17:76362772 SOCS3 [+6614bp] C - 13 A vs. G 0.025 (A) 0.075 (A) <1 (-) 0 (-) >0.05
rs9914220 chr17:76362890 SOCS3 [+6732bp] C - 13 T vs. C 0.05 (T) 0.3 (T) <1 (-) 0 (-) >0.05
rs68037230 chr17:76359013 SOCS3 [+2855bp] C - 13 C vs. G 0.042 (G) 0.075 (G) >1 (-) 0 (-) >0.05
rs28415866 chr17:76362553 SOCS3 [+6395bp] C - 13 C vs. G 0.05 (C) 0.3 (C) <1 (-) 0 (-) >0.05
rs4969182 chr17:76393030 PGS1 C - 13 T vs. C 0.467 (T) 0.483 (C) >1 (-) 0 (-) >0.05
rs72899784 chr17:76367670 PGS1 [-7051bp] C - 13 T vs. C 0.017 (C) 0.108 (C) >1 (-) 0 (-) >0.05
rs76600184 chr17:76368534 PGS1 [-6187bp] C - 13 A vs. G 0.05 (G) 0.108 (G) >1 (-) 0 (-) >0.05
rs2376583 chr17:76402105 PGS1 C - 13 A vs. T 0.475 (A) 0.5 (A) >1 (-) 0 (-) >0.05
rs55938653 chr17:76383671 PGS1 C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs7217910 chr17:76306529 SOCS3 [-46335bp] C - 12 T vs. C 0.458 (C) 0.15 (C) <1 (-) 28 (-) >0.05
rs66873412 chr17:76360352 SOCS3 [+4194bp] C - 13 A vs. C 0.042 (C) 0.3 (C) >1 (-) 0 (-) >0.05
rs7222563 chr17:76365484 PGS1 [-9237bp] C - 13 A vs. G 0.058 (G) 0.117 (G) >1 (-) 0 (-) >0.05
rs7219674 chr17:76390197 PGS1 C - 12 A vs. G - - >1 (-) 3 (-) >0.05
rs8069197 chr17:76306069 SOCS3 [-46795bp] C - 9 T vs. C - - <1 (-) 0 (-) >0.05
rs4969141 chr17:76391653 PGS1 C - 13 T vs. C 0.483 (C) 0.483 (T) <1 (-) 0 (-) >0.05
rs112747750 chr17:76363991 SOCS3 [+7833bp] C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs11657860 chr17:76387244 PGS1 C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs28539061 chr17:76362713 SOCS3 [+6555bp] C - 13 A vs. G 0.05 (G) 0.3 (G) >1 (-) 0 (-) >0.05
rs57367119 chr17:76367052 PGS1 [-7669bp] C - 13 A vs. G 0.05 (G) 0.117 (G) >1 (-) 0 (-) >0.05
rs7405886 chr17:76306102 SOCS3 [-46762bp] C - 12 A vs. G 0.2 (A) 0.183 (A) <1 (-) 38 (-) >0.05
rs7219625 chr17:76390080 PGS1 C - 13 T vs. C 0.492 (C) 0.483 (T) <1 (-) 0 (-) >0.05
rs55925148 chr17:76363479 SOCS3 [+7321bp] C - 13 T vs. C 0.033 (C) 0.3 (C) >1 (-) 0 (-) >0.05
rs78454905 chr17:76320511 SOCS3 [-32353bp] C - 9 T vs. C 0.017 (T) - <1 (-) 20 (-) >0.05
rs78679161 chr17:76314510 SOCS3 [-38354bp] C - 9 A vs. C 0.05 (A) - >1 (-) 0 (-) >0.05
rs58869566 chr17:76316918 SOCS3 [-35946bp] C - 12 A vs. G 0.3 (G) 0.033 (G) <1 (-) 38 (-) >0.05
rs11657987 chr17:76387363 PGS1 C - 13 T vs. G 0.467 (G) 0.367 (T) <1 (-) 0 (-) >0.05
rs116994828 chr17:76347598 SOCS3 [-5266bp] C - 7 T vs. C 0.017 (T) - <1 (-) 37 (-) >0.05
rs74833757 chr17:76398894 PGS1 C - 13 T vs. C 0.083 (C) 0.075 (C) >1 (-) 0 (-) >0.05
rs76123789 chr17:76371276 PGS1 [-3445bp] C - 13 T vs. C 0.075 (T) 0.15 (T) <1 (-) 0 (-) >0.05
rs76184408 chr17:76312003 SOCS3 [-40861bp] C - 9 C vs. G 0.033 (G) - <1 (-) 0 (-) >0.05
rs12948394 chr17:76382791 PGS1 C - 13 T vs. C 0.442 (T) 0.308 (T) >1 (-) 0 (-) >0.05
rs113854389 chr17:76376236 PGS1 C - 13 T vs. C 0.067 (T) - <1 (-) 0 (-) >0.05
rs2292644 chr17:76394449 PGS1 C - 13 T vs. C 0.375 (C) 0.458 (C) <1 (-) 0 (-) >0.05
rs1133845 chr17:76342215 SOCS3 [-10649bp] C - 12 T vs. C 0.067 (T) - <1 (-) 0 (-) >0.05

These results originate from GWAS-only meta-analyses for which no additional data can be shared publicly. See Methods for further details.