SOCS3, chr17:76352864-76356158 +/- 50000 base pairs
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Most significant meta-analysis in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs34337072 chr17:76372398 PGS1 [-2323bp] C - 13 A vs. G 0.208 (G) - <1 (-) 0 (-) <0.05

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs12450500 chr17:76395750 PGS1 C - 13 T vs. C 0.367 (C) 0.45 (C) <1 (-) 0 (-) >0.05
rs12450528 chr17:76395753 PGS1 C - 13 A vs. G 0.367 (G) 0.45 (G) <1 (-) 0 (-) >0.05
rs11077362 chr17:76397219 PGS1 C - 13 A vs. T 0.367 (A) 0.458 (A) >1 (-) 0 (-) >0.05
rs12952093 chr17:76363640 SOCS3 [+7482bp] C - 12 A vs. C 0.292 (A) 0.475 (C) <1 (-) 0 (-) >0.05
rs1976704 chr17:76401318 PGS1 C - 13 T vs. C 0.383 (C) 0.492 (T) <1 (-) 0 (-) >0.05
rs8072632 chr17:76397830 PGS1 C - 13 T vs. C 0.367 (T) 0.458 (T) >1 (-) 0 (-) >0.05
rs8071889 chr17:76398101 PGS1 C - 13 A vs. G 0.367 (A) 0.458 (A) >1 (-) 0 (-) >0.05
rs4789025 chr17:76304471 SOCS3 [-48393bp] C - 13 A vs. T 0.15 (A) 0.125 (A) <1 (-) 47 (-) >0.05
rs12451109 chr17:76389176 PGS1 C - 13 C vs. G - - >1 (-) 0 (-) >0.05
rs4325635 chr17:76338800 SOCS3 [-14064bp] C - 12 A vs. G 0.167 (A) - <1 (-) 27 (-) >0.05
rs75039282 chr17:76343993 SOCS3 [-8871bp] C - 12 T vs. C 0.167 (C) 0.042 (C) >1 (-) 26 (-) >0.05
rs62080360 chr17:76382179 PGS1 C - 12 T vs. C 0.092 (T) 0.042 (T) >1 (-) 0 (-) >0.05
rs11653278 chr17:76341560 SOCS3 [-11304bp] C - 12 A vs. G 0.167 (A) - <1 (-) 27 (-) >0.05
rs11077361 chr17:76397128 PGS1 C - 13 A vs. G 0.383 (A) 0.458 (A) >1 (-) 0 (-) >0.05
rs12602206 chr17:76397133 PGS1 C - 13 A vs. G 0.383 (A) 0.458 (A) >1 (-) 0 (-) >0.05
rs4371218 chr17:76338899 SOCS3 [-13965bp] C - 12 A vs. G 0.167 (G) 0.067 (G) >1 (-) 27 (-) >0.05
rs8070806 chr17:76381743 PGS1 C - 12 A vs. C 0.092 (C) 0.058 (C) <1 (-) 0 (-) >0.05
rs148472602 chr17:76323397 SOCS3 [-29467bp] C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs12953258 chr17:76356096 SOCS3 C - 12 T vs. G - - <1 (-) 6 (-) >0.05
rs12949584 chr17:76359571 SOCS3 [+3413bp] C - 12 T vs. C - - <1 (-) 6 (-) >0.05
rs12449849 chr17:76334260 SOCS3 [-18604bp] C - 9 A vs. G - - >1 (-) 19 (-) >0.05
rs8071552 chr17:76381416 PGS1 C - 12 T vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs74395281 chr17:76347076 SOCS3 [-5788bp] C - 12 C vs. G - - >1 (-) 25 (-) >0.05
rs12453598 chr17:76389164 PGS1 C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs55688659 chr17:76357977 SOCS3 [+1819bp] C - 12 A vs. G 0.133 (G) 0.317 (G) >1 (-) 0 (-) >0.05
rs62079112 chr17:76315061 SOCS3 [-37803bp] C - 9 T vs. C 0.125 (T) - >1 (-) 11 (-) >0.05
rs8070023 chr17:76372679 PGS1 [-2042bp] C - 12 A vs. C - - <1 (-) 3 (-) >0.05
rs938351 chr17:76399404 PGS1 C - 13 T vs. C 0.367 (C) 0.492 (T) <1 (-) 0 (-) >0.05
rs7220865 chr17:76377673 PGS1 C - 12 T vs. C 0.092 (T) 0.058 (T) >1 (-) 0 (-) >0.05
rs11653383 chr17:76387103 PGS1 C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs4630616 chr17:76330484 SOCS3 [-22380bp] C - 12 A vs. G 0.158 (A) - <1 (-) 0 (-) >0.05
rs149866080 chr17:76318120 SOCS3 [-34744bp] C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs4447485 chr17:76338687 SOCS3 [-14177bp] C - 12 T vs. C 0.183 (T) 0.108 (T) <1 (-) 26 (-) >0.05
rs12452576 chr17:76386037 PGS1 C - 13 A vs. C - - >1 (-) 0 (-) >0.05
rs11657865 chr17:76387274 PGS1 C - 13 A vs. C - 0.425 (C) >1 (-) 0 (-) >0.05
rs62079131 chr17:76328169 SOCS3 [-24695bp] C - 9 T vs. C - - <1 (-) 0 (-) >0.05
rs4969179 chr17:76391454 PGS1 C - 13 T vs. G 0.367 (T) 0.458 (T) >1 (-) 0 (-) >0.05
rs8077859 chr17:76386335 PGS1 C - 13 T vs. C 0.367 (C) 0.458 (C) <1 (-) 0 (-) >0.05
rs11653305 chr17:76386918 PGS1 C - 13 T vs. C 0.367 (T) 0.458 (T) >1 (-) 0 (-) >0.05
rs34337761 chr17:76303968 SOCS3 [-48896bp] C - 11 T vs. C 0.15 (T) 0.083 (T) <1 (-) 14 (-) >0.05
rs4527079 chr17:76368761 PGS1 [-5960bp] C - 12 A vs. G 0.133 (A) 0.292 (A) <1 (-) 5 (-) >0.05
rs4789577 chr17:76320835 SOCS3 [-32029bp] C - 13 T vs. C 0.483 (C) 0.442 (T) >1 (-) 47 (-) >0.05
rs28440475 chr17:76304834 SOCS3 [-48030bp] C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs62079132 chr17:76328860 SOCS3 [-24004bp] C - 12 T vs. C 0.175 (C) 0.142 (C) >1 (-) 0 (-) >0.05
rs56150035 chr17:76321176 SOCS3 [-31688bp] C - 9 A vs. G 0.1 (A) 0.092 (A) >1 (-) 0 (-) >0.05
rs4969178 chr17:76388202 PGS1 C - 13 A vs. G 0.375 (A) 0.425 (G) >1 (-) 0 (-) >0.05
rs56205534 chr17:76376525 PGS1 C - 12 T vs. C 0.092 (C) 0.058 (C) <1 (-) 0 (-) >0.05
rs4969169 chr17:76353910 SOCS3 C - 12 T vs. C 0.117 (T) 0.292 (T) <1 (-) 0 (-) >0.05
rs59362812 chr17:76381318 PGS1 C - 12 A vs. G 0.067 (G) - <1 (-) 0 (-) >0.05
rs74448818 chr17:76309051 SOCS3 [-43813bp] C - 9 T vs. C 0.008 (C) - >1 (-) 29 (-) >0.05

These results originate from GWAS-only meta-analyses for which no additional data can be shared publicly. See Methods for further details.