SOCS3, chr17:76352864-76356158 +/- 50000 base pairs
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Most significant meta-analysis in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs34337072 chr17:76372398 PGS1 [-2323bp] C - 13 A vs. G 0.208 (G) - <1 (-) 0 (-) <0.05

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs62079158 chr17:76381122 PGS1 C - 12 T vs. C 0.092 (T) 0.042 (T) >1 (-) 0 (-) >0.05
rs6501199 chr17:76334786 SOCS3 [-18078bp] C - 12 C vs. G 0.333 (G) 0.3 (G) >1 (-) 49 (-) >0.05
rs143046666 chr17:76400174 PGS1 C - 7 A vs. C - - >1 (-) 0 (-) >0.05
rs148455938 chr17:76359717 SOCS3 [+3559bp] C - 11 A vs. G - - <1 (-) 0 (-) >0.05
rs4994934 chr17:76364677 SOCS3 [+8519bp] C - 12 T vs. C 0.142 (T) 0.25 (T) <1 (-) 1 (-) >0.05
rs62079155 chr17:76374978 PGS1 C - 12 C vs. G 0.092 (G) 0.058 (G) <1 (-) 0 (-) >0.05
rs11651398 chr17:76322554 SOCS3 [-30310bp] C - 11 T vs. C 0.158 (T) - >1 (-) 0 (-) >0.05
rs6501196 chr17:76318544 SOCS3 [-34320bp] C - 13 A vs. G 0.208 (A) 0.275 (G) >1 (-) 10 (-) >0.05
rs117883742 chr17:76404526 PGS1 C - 7 A vs. G 0.017 (A) - >1 (-) 0 (-) >0.05
rs73380179 chr17:76350692 SOCS3 [-2172bp] C - 10 A vs. G - - >1 (-) 0 (-) >0.05
rs4444401 chr17:76324751 SOCS3 [-28113bp] C - 12 A vs. G 0.433 (G) 0.275 (A) <1 (-) 61 (-) >0.05
rs9896278 chr17:76373087 PGS1 [-1634bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs118050139 chr17:76308245 SOCS3 [-44619bp] C - 4 C vs. G - 0.108 (G) >1 (-) 30 (-) >0.05
rs112400356 chr17:76327523 SOCS3 [-25341bp] C - 12 T vs. C 0.058 (T) - <1 (-) 0 (-) >0.05
rs58888596 chr17:76342914 SOCS3 [-9950bp] C - 10 A vs. G 0.025 (A) 0.083 (A) <1 (-) 44 (-) >0.05
rs16971055 chr17:76326540 SOCS3 [-26324bp] C - 12 A vs. G 0.075 (A) - <1 (-) 0 (-) >0.05
rs71385947 chr17:76321675 SOCS3 [-31189bp] C - 11 A vs. G 0.15 (A) - >1 (-) 0 (-) >0.05
rs6501195 chr17:76318285 SOCS3 [-34579bp] C - 13 C vs. G - - <1 (-) 6 (-) >0.05
rs12948931 chr17:76322745 SOCS3 [-30119bp] C - 11 A vs. C 0.158 (A) - >1 (-) 0 (-) >0.05
rs73382006 chr17:76369652 PGS1 [-5069bp] C - 12 A vs. T - 0.183 (T) >1 (-) 0 (-) >0.05
rs113052902 chr17:76369385 PGS1 [-5336bp] C - 12 A vs. G - 0.183 (A) <1 (-) 0 (-) >0.05
rs8076327 chr17:76314261 SOCS3 [-38603bp] C - 13 T vs. C 0.05 (T) 0.483 (C) <1 (-) 0 (-) >0.05
rs9902907 chr17:76370452 PGS1 [-4269bp] C - 12 T vs. C - 0.183 (C) >1 (-) 0 (-) >0.05
rs4789029 chr17:76325125 SOCS3 [-27739bp] C - 13 C vs. G 0.208 (C) 0.467 (G) >1 (-) 3 (-) >0.05
rs17642091 chr17:76328837 SOCS3 [-24027bp] C - 9 A vs. G 0.158 (A) - >1 (-) 6 (-) >0.05
rs6501198 chr17:76334446 SOCS3 [-18418bp] C - 12 T vs. C 0.208 (T) - <1 (-) 41 (-) >0.05
rs8071356 chr17:76349996 SOCS3 [-2868bp] C - 10 T vs. G 0.217 (G) 0.192 (G) >1 (-) 25 (-) >0.05
rs9898312 chr17:76313609 SOCS3 [-39255bp] C - 13 C vs. G 0.192 (C) 0.467 (G) >1 (-) 10 (-) >0.05
rs7216115 chr17:76346296 SOCS3 [-6568bp] C - 6 T vs. G 0.017 (G) - <1 (-) 0 (-) >0.05
rs8069976 chr17:76349850 SOCS3 [-3014bp] C - 10 A vs. C 0.217 (A) 0.192 (A) <1 (-) 25 (-) >0.05
rs116077620 chr17:76326725 SOCS3 [-26139bp] C - 7 A vs. G 0.008 (A) - >1 (-) 0 (-) >0.05
rs4969168 chr17:76353793 SOCS3 C - 12 A vs. G 0.125 (A) 0.45 (A) <1 (-) 0 (-) >0.05
rs58842514 chr17:76367270 PGS1 [-7451bp] C - 12 T vs. C - 0.15 (T) <1 (-) 0 (-) >0.05
rs60611478 chr17:76367136 PGS1 [-7585bp] C - 12 T vs. C - 0.175 (T) <1 (-) 0 (-) >0.05
rs112872544 chr17:76337531 SOCS3 [-15333bp] C - 10 A vs. C - 0.083 (C) >1 (-) 43 (-) >0.05
rs73380172 chr17:76337683 SOCS3 [-15181bp] C - 10 A vs. G 0.033 (G) 0.083 (G) >1 (-) 43 (-) >0.05
rs62079111 chr17:76311256 SOCS3 [-41608bp] C - 9 T vs. C 0.042 (T) - <1 (-) 39 (-) >0.05
rs11077358 chr17:76343922 SOCS3 [-8942bp] C - 11 T vs. G 0.133 (T) 0.0 (T) >1 (-) 41 (-) >0.05
rs6501202 chr17:76335148 SOCS3 [-17716bp] C - 12 A vs. G 0.217 (A) - <1 (-) 43 (-) >0.05
rs62079137 chr17:76358269 SOCS3 [+2111bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs7213427 chr17:76320129 SOCS3 [-32735bp] C - 13 A vs. G 0.45 (A) 0.267 (G) <1 (-) 51 (-) >0.05
rs7213512 chr17:76319940 SOCS3 [-32924bp] C - 13 A vs. G - - >1 (-) 49 (-) >0.05
rs8082660 chr17:76304539 SOCS3 [-48325bp] C - 11 T vs. C 0.15 (C) 0.125 (C) >1 (-) 5 (-) >0.05
rs142723474 chr17:76308159 SOCS3 [-44705bp] C - 10 A vs. G - - <1 (-) 18 (-) >0.05
rs6501197 chr17:76334015 SOCS3 [-18849bp] C - 12 A vs. G - - <1 (-) 44 (-) >0.05
rs28632046 chr17:76378413 PGS1 C - 12 A vs. G - 0.192 (A) <1 (-) 0 (-) >0.05
rs149847304 chr17:76308339 SOCS3 [-44525bp] C - 10 T vs. C - - <1 (-) 18 (-) >0.05
rs150856414 chr17:76332780 SOCS3 [-20084bp] C - 3 T vs. C - - <1 (-) 0 (-) >0.05
rs112037402 chr17:76337438 SOCS3 [-15426bp] C - 9 T vs. C - - <1 (-) 37 (-) >0.05
rs62079138 chr17:76359676 SOCS3 [+3518bp] C - 12 A vs. T - - >1 (-) 0 (-) >0.05

These results originate from GWAS-only meta-analyses for which no additional data can be shared publicly. See Methods for further details.