SOCS3, chr17:76352864-76356158 +/- 50000 base pairs
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Most significant meta-analysis in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs34337072 chr17:76372398 PGS1 [-2323bp] C - 13 A vs. G 0.208 (G) - <1 (-) 0 (-) <0.05

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs12601655 chr17:76371592 PGS1 [-3129bp] C - 12 A vs. G 0.167 (G) 0.225 (G) >1 (-) 0 (-) >0.05
rs6501200 chr17:76334867 SOCS3 [-17997bp] C - 12 A vs. G 0.208 (A) 0.008 (A) <1 (-) 44 (-) >0.05
rs56208978 chr17:76315273 SOCS3 [-37591bp] C - 9 C vs. G 0.158 (G) - >1 (-) 0 (-) >0.05
rs117405119 chr17:76324298 SOCS3 [-28566bp] C - 4 T vs. G 0.025 (T) - <1 (-) 0 (-) >0.05
rs62079102 chr17:76304965 SOCS3 [-47899bp] C - 11 T vs. G - - >1 (-) 9 (-) >0.05
rs8064821 chr17:76357391 SOCS3 [+1233bp] C - 12 A vs. C 0.092 (A) 0.2 (A) >1 (-) 0 (-) >0.05
rs8082659 chr17:76304532 SOCS3 [-48332bp] C - 9 T vs. C 0.2 (C) 0.125 (C) <1 (-) 0 (-) >0.05
rs4322734 chr17:76323747 SOCS3 [-29117bp] C - 13 T vs. C - - >1 (-) 44 (-) >0.05
rs7207782 chr17:76357378 SOCS3 [+1220bp] C - 12 A vs. G 0.425 (A) 0.092 (A) <1 (-) 0 (-) >0.05
rs12936911 chr17:76328278 SOCS3 [-24586bp] C - 8 T vs. C 0.033 (T) - >1 (-) 0 (-) >0.05
rs58030087 chr17:76331294 SOCS3 [-21570bp] C - 11 T vs. C 0.025 (T) 0.075 (T) <1 (-) 0 (-) >0.05
rs11658216 chr17:76344918 SOCS3 [-7946bp] C - 6 T vs. C - 0.342 (C) <1 (-) 23 (-) >0.05
rs62079152 chr17:76367106 PGS1 [-7615bp] C - 12 A vs. G 0.158 (A) 0.208 (A) <1 (-) 0 (-) >0.05
rs7214387 chr17:76319958 SOCS3 [-32906bp] C - 13 T vs. C 0.467 (T) 0.442 (C) <1 (-) 49 (-) >0.05
rs113393496 chr17:76368278 PGS1 [-6443bp] C - 12 A vs. G 0.167 (A) 0.208 (A) <1 (-) 0 (-) >0.05
rs9915308 chr17:76305633 SOCS3 [-47231bp] C - 10 T vs. C - 0.117 (T) >1 (-) 0 (-) >0.05
rs62079128 chr17:76321811 SOCS3 [-31053bp] C - 12 C vs. G 0.117 (G) - >1 (-) 0 (-) >0.05
rs4969144 chr17:76406084 PGS1 C - 13 A vs. C - - <1 (-) 0 (-) >0.05
rs7215542 chr17:76368171 PGS1 [-6550bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs4789576 chr17:76321986 SOCS3 [-30878bp] C - 12 A vs. G 0.217 (G) 0.45 (A) >1 (-) 0 (-) >0.05
rs11868378 chr17:76357874 SOCS3 [+1716bp] C - 12 A vs. G 0.225 (G) 0.425 (A) >1 (-) 0 (-) >0.05
rs148962996 chr17:76384588 PGS1 C - 11 A vs. T - - >1 (-) 55 (-) >0.05
rs7207352 chr17:76318708 SOCS3 [-34156bp] C - 13 A vs. C 0.442 (C) 0.275 (A) >1 (-) 52 (-) >0.05
rs8081100 chr17:76323521 SOCS3 [-29343bp] C - 13 A vs. C - - >1 (-) 0 (-) >0.05
rs7208516 chr17:76318682 SOCS3 [-34182bp] C - 13 T vs. C 0.442 (T) 0.267 (C) <1 (-) 52 (-) >0.05
rs113951371 chr17:76325620 SOCS3 [-27244bp] C - 12 T vs. C 0.042 (C) - <1 (-) 0 (-) >0.05
rs12450175 chr17:76303016 SOCS3 [-49848bp] C - 13 T vs. C 0.175 (C) 0.45 (C) <1 (-) 0 (-) >0.05
rs146951350 chr17:76306897 SOCS3 [-45967bp] C - 11 A vs. G - - >1 (-) 0 (-) >0.05
rs62079154 chr17:76373922 PGS1 [-799bp] C - 12 A vs. G 0.175 (G) 0.183 (G) >1 (-) 0 (-) >0.05
rs4283288 chr17:76338963 SOCS3 [-13901bp] C - 11 T vs. C 0.133 (T) 0.008 (T) >1 (-) 40 (-) >0.05
rs58683032 chr17:76350722 SOCS3 [-2142bp] C - 3 A vs. G 0.025 (A) 0.042 (A) >1 (-) 0 (-) >0.05
rs4429354 chr17:76314189 SOCS3 [-38675bp] C - 13 A vs. G 0.167 (A) 0.0 (A) <1 (-) 56 (-) >0.05
rs4789579 chr17:76315431 SOCS3 [-37433bp] C - 13 A vs. T 0.208 (T) 0.0 (T) >1 (-) 49 (-) >0.05
rs60254354 chr17:76309046 SOCS3 [-43818bp] C - 13 T vs. C 0.458 (C) 0.283 (C) <1 (-) 10 (-) >0.05
rs80140768 chr17:76332351 SOCS3 [-20513bp] C - 11 T vs. G - 0.075 (T) <1 (-) 10 (-) >0.05
rs73378198 chr17:76333428 SOCS3 [-19436bp] C - 11 T vs. C - 0.075 (C) >1 (-) 9 (-) >0.05
rs73378194 chr17:76333223 SOCS3 [-19641bp] C - 11 T vs. C 0.025 (T) 0.083 (T) <1 (-) 9 (-) >0.05
rs73998036 chr17:76333127 SOCS3 [-19737bp] C - 11 A vs. G 0.025 (A) 0.092 (A) <1 (-) 11 (-) >0.05
rs73998037 chr17:76333131 SOCS3 [-19733bp] C - 11 A vs. G 0.025 (A) 0.092 (A) <1 (-) 11 (-) >0.05
rs73380163 chr17:76335209 SOCS3 [-17655bp] C - 11 T vs. C 0.025 (C) 0.075 (C) >1 (-) 6 (-) >0.05
rs9904782 chr17:76307540 SOCS3 [-45324bp] C - 12 T vs. C 0.475 (T) 0.375 (T) <1 (-) 0 (-) >0.05
rs62079110 chr17:76311156 SOCS3 [-41708bp] C - 13 A vs. G 0.458 (A) 0.283 (A) >1 (-) 8 (-) >0.05
rs7220649 chr17:76331757 SOCS3 [-21107bp] C - 11 T vs. C - - <1 (-) 10 (-) >0.05
rs8076179 chr17:76314242 SOCS3 [-38622bp] C - 13 A vs. C 0.058 (C) 0.483 (A) >1 (-) 28 (-) >0.05
rs35397088 chr17:76325098 SOCS3 [-27766bp] C - 10 A vs. G - - <1 (-) 0 (-) >0.05
rs10852710 chr17:76310300 SOCS3 [-42564bp] C - 13 T vs. G 0.183 (T) 0.492 (G) >1 (-) 15 (-) >0.05
rs7220282 chr17:76310947 SOCS3 [-41917bp] C - 13 A vs. G 0.458 (A) 0.283 (A) >1 (-) 9 (-) >0.05
rs73378191 chr17:76332904 SOCS3 [-19960bp] C - 11 A vs. G - - >1 (-) 9 (-) >0.05
rs12945443 chr17:76327463 SOCS3 [-25401bp] C - 13 A vs. G 0.2 (A) - >1 (-) 3 (-) >0.05
rs4416078 chr17:76308375 SOCS3 [-44489bp] C - 13 A vs. G 0.458 (A) 0.283 (A) >1 (-) 9 (-) >0.05

These results originate from GWAS-only meta-analyses for which no additional data can be shared publicly. See Methods for further details.