SPTSSB, chr3:161062580-161090668 +/- 50000 base pairs
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Most significant meta-analysis in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs1450522 chr3:161077630 SPTSSB C - 13 A vs. G 0.35 (G) 0.433 (A) <1 (-) 22 (-) <1.00e-06

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs1450522 chr3:161077630 SPTSSB C - 13 A vs. G 0.35 (G) 0.433 (A) <1 (-) 22 (-) <1.00e-06
rs1478566 chr3:161030335 SPTSSB [-32245bp] C - 13 A vs. T 0.333 (T) 0.417 (A) <1 (-) 12 (-) <1.00e-06
rs7610985 chr3:161062848 SPTSSB C - 13 A vs. G 0.333 (A) 0.433 (G) >1 (-) 13 (-) <1.00e-06
rs11929238 chr3:161045937 SPTSSB [-16643bp] C - 13 A vs. T 0.333 (T) 0.433 (A) <1 (-) 7 (-) <1.00e-06
rs2100238 chr3:161058055 SPTSSB [-4525bp] C - 13 A vs. T 0.333 (A) 0.425 (T) >1 (-) 10 (-) <1.00e-06
rs6441374 chr3:161064540 SPTSSB C - 13 A vs. T 0.367 (T) 0.408 (A) <1 (-) 14 (-) <1.00e-06
rs67460515 chr3:161068566 SPTSSB All: C 108,990 15 C vs. T 0.308 (C) 0.433 (T) 1.08 (1.05-1.12) 46 (2-70) 4.82e-06
rs2122527 chr3:161091636 SPTSSB [+968bp] C - 13 A vs. G 0.35 (A) 0.325 (G) >1 (-) 3 (-) <1.00e-04
rs2054710 chr3:161090616 SPTSSB All: C 108,990 15 T vs. C 0.333 (T) 0.433 (C) 1.08 (1.04-1.12) 46 (1-70) 6.15e-06
rs2404341 chr3:161092405 SPTSSB [+1737bp] All: C 108,990 15 C vs. T 0.325 (C) 0.433 (T) 1.08 (1.04-1.12) 46 (1-70) 6.27e-06
rs13062740 chr3:161024208 SPTSSB [-38372bp] All: C 108,990 15 A vs. G 0.325 (A) 0.408 (G) 1.08 (1.04-1.12) 35 (0-65) 6.50e-06
rs11710489 chr3:161093332 SPTSSB [+2664bp] All: C 108,990 15 A vs. G 0.333 (A) 0.433 (G) 1.08 (1.04-1.12) 45 (0-70) 6.64e-06
rs2404342 chr3:161092562 SPTSSB [+1894bp] All: C 108,990 15 T vs. C 0.342 (T) 0.433 (C) 1.08 (1.04-1.12) 45 (0-70) 7.02e-06
rs13076251 chr3:161096848 SPTSSB [+6180bp] All: C 108,990 15 G vs. A - - 0.93 (0.90-0.96) 45 (0-70) 7.25e-06
rs7647118 chr3:161016165 NMD3 [+44845bp] All: C 108,990 15 C vs. T 0.342 (C) 0.433 (T) 1.08 (1.04-1.12) 38 (0-66) 7.40e-06
rs13059340 chr3:161062631 SPTSSB All: C 108,990 15 C vs. T 0.333 (C) 0.417 (T) 1.08 (1.04-1.12) 41 (0-68) 7.44e-06
rs1382429 chr3:161015153 NMD3 [+43833bp] All: C 108,990 15 C vs. T 0.333 (C) 0.433 (T) 1.08 (1.04-1.12) 37 (0-66) 7.58e-06
rs4856704 chr3:161087152 SPTSSB All: C 108,990 15 C vs. T - - 0.91 (0.87-0.95) 32 (0-64) 8.39e-06
rs11718905 chr3:161051793 SPTSSB [-10787bp] All: C 108,990 15 A vs. G 0.333 (A) 0.425 (G) 1.08 (1.04-1.12) 40 (0-67) 8.58e-06
rs16832082 chr3:161043571 SPTSSB [-19009bp] All: C 108,990 15 G vs. A 0.333 (G) 0.433 (A) 1.08 (1.04-1.12) 37 (0-66) 8.63e-06
rs11715591 chr3:161043137 SPTSSB [-19443bp] All: C 108,990 15 T vs. C 0.325 (T) 0.433 (C) 1.08 (1.04-1.12) 37 (0-66) 8.88e-06
rs13073147 chr3:161045237 SPTSSB [-17343bp] All: C 108,990 15 C vs. T 0.333 (C) 0.433 (T) 1.08 (1.04-1.11) 37 (0-66) 1.00e-05
rs4856703 chr3:161047720 SPTSSB [-14860bp] All: C 108,990 15 T vs. G 0.333 (T) 0.433 (G) 1.08 (1.04-1.11) 38 (0-66) 1.05e-05
rs10513564 chr3:161059762 SPTSSB [-2818bp] All: C 108,990 15 G vs. A 0.333 (G) 0.425 (A) 1.08 (1.04-1.11) 39 (0-67) 1.11e-05
rs11711695 chr3:161057593 SPTSSB [-4987bp] All: C 108,990 15 G vs. A 0.333 (G) 0.425 (A) 1.08 (1.04-1.11) 39 (0-67) 1.15e-05
rs34896809 chr3:161059804 SPTSSB [-2776bp] All: C 108,990 15 T vs. C 0.333 (T) 0.425 (C) 1.08 (1.04-1.12) 38 (0-67) 1.20e-05
rs6780536 chr3:161058726 SPTSSB [-3854bp] All: C 108,990 15 C vs. T 0.333 (C) 0.425 (T) 1.08 (1.04-1.11) 39 (0-67) 1.20e-05
rs34771618 chr3:161059795 SPTSSB [-2785bp] All: C 108,990 15 C vs. A 0.333 (C) 0.425 (A) 1.08 (1.04-1.12) 38 (0-66) 1.29e-05
rs4856701 chr3:161044106 SPTSSB [-18474bp] C - 13 T vs. G 0.367 (T) 0.283 (G) >1 (-) 0 (-) <1.00e-04
rs10936227 chr3:161043869 SPTSSB [-18711bp] C - 13 T vs. G 0.375 (G) 0.283 (T) <1 (-) 0 (-) <1.00e-04
rs35100811 chr3:161084046 SPTSSB All: C 108,990 15 C vs. A 0.333 (C) 0.433 (A) 1.08 (1.04-1.11) 46 (2-71) 2.42e-05
rs1450519 chr3:161094930 SPTSSB [+4262bp] C - 13 T vs. C 0.383 (C) 0.183 (T) <1 (-) 0 (-) <1.00e-04
rs1349352 chr3:161118486 SPTSSB [+27818bp] C - 13 T vs. C 0.383 (T) 0.442 (C) >1 (-) 26 (-) <1.00e-04
rs11713185 chr3:161111357 SPTSSB [+20689bp] C - 13 C vs. G 0.4 (G) 0.442 (C) <1 (-) 27 (-) <1.00e-04
rs16832246 chr3:161109916 SPTSSB [+19248bp] C - 13 A vs. G 0.4 (A) 0.442 (G) >1 (-) 27 (-) <1.00e-04
rs11710916 chr3:161130070 SPTSSB [+39402bp] C - 13 T vs. C 0.4 (C) 0.442 (T) <1 (-) 29 (-) <1.00e-04
rs11710086 chr3:161125858 SPTSSB [+35190bp] C - 13 A vs. T 0.4 (T) 0.442 (A) <1 (-) 29 (-) <1.00e-04
rs73021449 chr3:161128941 SPTSSB [+38273bp] C - 13 A vs. G 0.4 (A) 0.442 (G) >1 (-) 29 (-) <1.00e-04
rs35713426 chr3:161131271 SPTSSB [+40603bp] C - 13 A vs. G 0.4 (G) 0.442 (A) <1 (-) 29 (-) <1.00e-04
rs1839491 chr3:161126429 SPTSSB [+35761bp] C - 13 A vs. C 0.4 (A) 0.442 (C) >1 (-) 28 (-) <1.00e-04
rs34727114 chr3:161138929 SPTSSB [+48261bp] C - 13 A vs. C 0.4 (C) 0.433 (A) <1 (-) 30 (-) <1.00e-04
rs67077657 chr3:161138521 SPTSSB [+47853bp] C - 13 A vs. G 0.4 (G) 0.433 (A) <1 (-) 30 (-) <1.00e-04
rs336572 chr3:161068014 SPTSSB C - 13 A vs. G 0.492 (A) 0.15 (G) >1 (-) 28 (-) <1.00e-04
rs13084731 chr3:161086020 SPTSSB All: C 108,990 15 A vs. G 0.35 (A) 0.333 (G) 1.07 (1.03-1.10) 31 (0-63) 7.28e-05
rs13084746 chr3:161086038 SPTSSB All: C 108,990 15 A vs. G 0.35 (A) 0.317 (G) 1.07 (1.03-1.10) 31 (0-63) 7.28e-05
rs1376122 chr3:161087857 SPTSSB All: C 108,990 15 G vs. A 0.35 (G) 0.317 (A) 1.07 (1.03-1.10) 31 (0-63) 7.59e-05
rs60625846 chr3:161084525 SPTSSB All: C 108,990 15 T vs. G 0.35 (T) 0.317 (G) 1.07 (1.03-1.10) 31 (0-63) 7.70e-05
rs9844862 chr3:161076188 SPTSSB All: C 108,990 15 A vs. G 0.358 (A) 0.275 (G) 1.07 (1.03-1.10) 31 (0-63) 7.82e-05
rs1450523 chr3:161077270 SPTSSB All: C 108,990 15 A vs. G 0.35 (A) 0.325 (G) 1.07 (1.03-1.10) 31 (0-63) 7.99e-05
rs1450521 chr3:161091237 SPTSSB [+569bp] All: C 108,990 15 A vs. C 0.367 (A) 0.317 (C) 1.07 (1.03-1.10) 31 (0-63) 8.13e-05

Association studies for this region [+]