SPTSSB, chr3:161062580-161090668 +/- 50000 base pairs
View on:

Most significant meta-analysis in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs1450522 chr3:161077630 SPTSSB C - 13 A vs. G 0.35 (G) 0.433 (A) <1 (-) 22 (-) <1.00e-06

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs1478568 chr3:161014276 NMD3 [+42956bp] C - 12 T vs. C 0.467 (T) 0.158 (C) >1 (-) 7 (-) <0.05
rs7638668 chr3:161047283 SPTSSB [-15297bp] C - 13 A vs. G 0.492 (G) 0.008 (G) >1 (-) 0 (-) <0.05
rs9790314 chr3:161019558 SPTSSB [-43022bp] C - 13 T vs. C 0.492 (T) 0.092 (T) <1 (-) 0 (-) <0.05
rs1382427 chr3:161032576 SPTSSB [-30004bp] C - 13 T vs. C 0.5 (C) 0.0 (T) <1 (-) 0 (-) <0.05
rs336548 chr3:161058412 SPTSSB [-4168bp] C - 13 T vs. C 0.492 (T) 0.008 (T) <1 (-) 0 (-) <0.05
rs1600209 chr3:161038217 SPTSSB [-24363bp] C - 13 A vs. T 0.492 (A) 0.008 (A) <1 (-) 0 (-) <0.05
rs9850455 chr3:161017192 SPTSSB [-45388bp] C - 13 A vs. G 0.492 (G) 0.092 (G) >1 (-) 0 (-) <0.05
rs6441373 chr3:161026717 SPTSSB [-35863bp] C - 13 T vs. G 0.492 (T) 0.008 (T) <1 (-) 0 (-) <0.05
rs1993891 chr3:161047467 SPTSSB [-15113bp] C - 13 A vs. G 0.492 (A) 0.0 (A) <1 (-) 0 (-) <0.05
rs10804790 chr3:161039300 SPTSSB [-23280bp] C - 13 A vs. T 0.5 (T) 0.008 (T) >1 (-) 0 (-) <0.05
rs1478565 chr3:161027464 SPTSSB [-35116bp] C - 13 T vs. C 0.492 (C) 0.008 (C) >1 (-) 0 (-) <0.05
rs16832279 chr3:161120483 SPTSSB [+29815bp] C - 12 T vs. C 0.4 (T) 0.442 (C) >1 (-) 0 (-) <0.05
rs7647327 chr3:161016421 NMD3 [+45101bp] C - 13 T vs. C 0.492 (T) 0.008 (T) <1 (-) 0 (-) <0.05
rs975323 chr3:161021322 SPTSSB [-41258bp] C - 13 A vs. G 0.492 (A) 0.0 (A) <1 (-) 0 (-) <0.05
rs1811483 chr3:161130900 SPTSSB [+40232bp] C - 12 A vs. G 0.4 (G) 0.442 (A) <1 (-) 0 (-) <0.05
rs9870059 chr3:161017240 SPTSSB [-45340bp] C - 13 T vs. C 0.492 (T) 0.0 (T) <1 (-) 0 (-) <0.05
rs3849524 chr3:161015589 NMD3 [+44269bp] C - 13 T vs. C 0.492 (C) 0.008 (C) >1 (-) 0 (-) <0.05
rs163327 chr3:161062724 SPTSSB C - 13 A vs. G 0.475 (G) 0.008 (A) <1 (-) 0 (-) <0.05
rs113102660 chr3:161024013 SPTSSB [-38567bp] C - 7 T vs. C 0.05 (T) - >1 (-) 52 (-) <0.05
rs138667128 chr3:161087207 SPTSSB C - 12 T vs. C - - <1 (-) 20 (-) <0.05
rs116190718 chr3:161027420 SPTSSB [-35160bp] C - 10 A vs. G 0.017 (A) - <1 (-) 28 (-) <0.05
rs115822821 chr3:161075189 SPTSSB C - 13 T vs. C 0.092 (T) - <1 (-) 0 (-) <0.05
rs114528427 chr3:161075360 SPTSSB C - 13 T vs. C 0.067 (T) - <1 (-) 0 (-) <0.05
rs80349259 chr3:161089309 SPTSSB C - 13 T vs. G 0.092 (T) - <1 (-) 0 (-) <0.05
rs79250676 chr3:161124925 SPTSSB [+34257bp] C - 13 T vs. C 0.042 (T) - >1 (-) 0 (-) >0.05
rs114926857 chr3:161049234 SPTSSB [-13346bp] C - 12 T vs. C 0.058 (T) - >1 (-) 0 (-) >0.05
rs9290075 chr3:161020136 SPTSSB [-42444bp] C - 13 T vs. G 0.092 (T) 0.15 (T) <1 (-) 0 (-) >0.05
rs336563 chr3:161117894 SPTSSB [+27226bp] C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs115543374 chr3:161133065 SPTSSB [+42397bp] C - 12 T vs. C 0.017 (C) - >1 (-) 0 (-) >0.05
rs79852225 chr3:161123409 SPTSSB [+32741bp] C - 8 T vs. C 0.025 (T) - >1 (-) 57 (-) >0.05
rs147556777 chr3:161082657 SPTSSB C - 3 T vs. C - - >1 (-) 0 (-) >0.05
rs144728387 chr3:161033504 SPTSSB [-29076bp] C - 9 A vs. G - - >1 (-) 53 (-) >0.05
rs140280588 chr3:161109739 SPTSSB [+19071bp] C - 3 A vs. C - - <1 (-) 0 (-) >0.05
rs57201455 chr3:161037724 SPTSSB [-24856bp] C - 13 T vs. C 0.133 (C) 0.192 (C) >1 (-) 0 (-) >0.05
rs116343977 chr3:161095846 SPTSSB [+5178bp] C - 9 A vs. G 0.025 (A) - >1 (-) 58 (-) >0.05
rs61193379 chr3:161035961 SPTSSB [-26619bp] C - 13 T vs. G 0.042 (T) 0.142 (T) <1 (-) 14 (-) >0.05
rs115372984 chr3:161045877 SPTSSB [-16703bp] C - 8 T vs. C 0.008 (C) - <1 (-) 0 (-) >0.05
rs336574 chr3:161067350 SPTSSB C - 13 A vs. G 0.092 (G) 0.183 (G) >1 (-) 0 (-) >0.05
rs336576 chr3:161066432 SPTSSB C - 13 C vs. G 0.083 (G) 0.183 (G) >1 (-) 0 (-) >0.05
rs76361117 chr3:161101367 SPTSSB [+10699bp] C - 13 A vs. C 0.192 (A) - >1 (-) 26 (-) >0.05
rs336587 chr3:161081253 SPTSSB C - 13 T vs. G 0.075 (T) 0.192 (T) <1 (-) 0 (-) >0.05
rs9839404 chr3:161015180 NMD3 [+43860bp] C - 13 T vs. C 0.133 (T) 0.183 (T) <1 (-) 0 (-) >0.05
rs336573 chr3:161067740 SPTSSB C - 13 A vs. G 0.092 (G) 0.183 (G) >1 (-) 0 (-) >0.05
rs12630038 chr3:161030394 SPTSSB [-32186bp] C - 13 T vs. C - 0.142 (T) <1 (-) 11 (-) >0.05
rs1478567 chr3:161014358 NMD3 [+43038bp] C - 13 A vs. G 0.133 (A) 0.192 (A) <1 (-) 0 (-) >0.05
rs461616 chr3:161094878 SPTSSB [+4210bp] C - 13 A vs. G 0.092 (A) 0.183 (A) <1 (-) 0 (-) >0.05
rs56890199 chr3:161035938 SPTSSB [-26642bp] C - 13 A vs. G 0.042 (G) 0.133 (G) >1 (-) 8 (-) >0.05
rs458197 chr3:161092764 SPTSSB [+2096bp] C - 13 A vs. G 0.092 (A) 0.183 (A) <1 (-) 0 (-) >0.05
rs336571 chr3:161068084 SPTSSB C - 13 T vs. C 0.092 (T) 0.183 (T) <1 (-) 0 (-) >0.05
rs455739 chr3:161089460 SPTSSB C - 13 A vs. G 0.092 (A) 0.175 (A) <1 (-) 0 (-) >0.05

Association studies for this region [+]