SPTSSB, chr3:161062580-161090668 +/- 50000 base pairs
View on:

Most significant meta-analysis in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs1450522 chr3:161077630 SPTSSB C - 13 A vs. G 0.35 (G) 0.433 (A) <1 (-) 22 (-) <1.00e-06

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9812083 chr3:161016987 SPTSSB [-45593bp] C - 13 A vs. G 0.133 (G) 0.192 (G) >1 (-) 0 (-) >0.05
rs419703 chr3:161087443 SPTSSB C - 13 A vs. G 0.083 (G) 0.175 (G) >1 (-) 0 (-) >0.05
rs9811833 chr3:161029792 SPTSSB [-32788bp] C - 13 T vs. G 0.133 (T) 0.192 (T) <1 (-) 0 (-) >0.05
rs62279892 chr3:161028330 SPTSSB [-34250bp] C - 13 A vs. G 0.117 (G) 0.158 (G) >1 (-) 0 (-) >0.05
rs73162530 chr3:161036486 SPTSSB [-26094bp] C - 13 A vs. T 0.133 (T) 0.192 (T) >1 (-) 0 (-) >0.05
rs978933 chr3:161036373 SPTSSB [-26207bp] C - 13 T vs. C 0.133 (C) 0.192 (C) >1 (-) 0 (-) >0.05
rs12632346 chr3:161020975 SPTSSB [-41605bp] C - 13 A vs. G 0.042 (G) 0.15 (G) >1 (-) 4 (-) >0.05
rs336584 chr3:161081785 SPTSSB C - 13 A vs. C 0.092 (A) 0.175 (A) <1 (-) 0 (-) >0.05
rs336581 chr3:161082739 SPTSSB C - 13 T vs. C 0.075 (C) 0.183 (C) >1 (-) 0 (-) >0.05
rs336565 chr3:161074169 SPTSSB C - 13 T vs. C 0.092 (C) 0.175 (C) >1 (-) 0 (-) >0.05
rs336592 chr3:161077186 SPTSSB C - 13 T vs. C 0.092 (C) 0.183 (C) >1 (-) 0 (-) >0.05
rs1471440 chr3:161041115 SPTSSB [-21465bp] C - 13 A vs. G 0.133 (G) 0.192 (G) >1 (-) 0 (-) >0.05
rs163138 chr3:161075399 SPTSSB C - 13 T vs. C 0.083 (C) 0.158 (C) >1 (-) 0 (-) >0.05
rs336588 chr3:161080584 SPTSSB C - 13 T vs. G 0.092 (T) 0.175 (T) <1 (-) 0 (-) >0.05
rs73875482 chr3:161032917 SPTSSB [-29663bp] C - 13 T vs. G 0.042 (G) 0.125 (G) >1 (-) 4 (-) >0.05
rs459067 chr3:161094808 SPTSSB [+4140bp] C - 13 A vs. G 0.092 (A) 0.183 (A) <1 (-) 0 (-) >0.05
rs336564 chr3:161075149 SPTSSB C - 13 A vs. G 0.092 (A) 0.183 (A) <1 (-) 0 (-) >0.05
rs12108169 chr3:161016387 NMD3 [+45067bp] C - 13 A vs. T 0.042 (T) 0.15 (T) >1 (-) 2 (-) >0.05
rs60228180 chr3:161039243 SPTSSB [-23337bp] C - 13 T vs. C 0.033 (T) 0.133 (T) <1 (-) 3 (-) >0.05
rs1904204 chr3:161039528 SPTSSB [-23052bp] C - 13 A vs. T 0.05 (A) 0.133 (A) <1 (-) 4 (-) >0.05
rs73875492 chr3:161043099 SPTSSB [-19481bp] C - 13 A vs. G 0.042 (G) 0.15 (G) >1 (-) 3 (-) >0.05
rs56741879 chr3:161038152 SPTSSB [-24428bp] C - 13 A vs. G 0.042 (G) 0.15 (G) >1 (-) 4 (-) >0.05
rs336544 chr3:161060558 SPTSSB [-2022bp] C - 12 T vs. C 0.133 (T) 0.192 (T) <1 (-) 0 (-) >0.05
rs112086073 chr3:161134830 SPTSSB [+44162bp] C - 3 A vs. G - - <1 (-) 36 (-) >0.05
rs336545 chr3:161060507 SPTSSB [-2073bp] C - 13 T vs. C 0.133 (T) 0.192 (T) <1 (-) 0 (-) >0.05
rs6800515 chr3:161071947 SPTSSB C - 12 A vs. G 0.017 (G) 0.117 (G) >1 (-) 0 (-) >0.05
rs73162597 chr3:161127109 SPTSSB [+36441bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs73162595 chr3:161120851 SPTSSB [+30183bp] C - 13 A vs. G 0.017 (A) - <1 (-) 0 (-) >0.05
rs76357082 chr3:161083660 SPTSSB C - 13 T vs. C 0.017 (T) 0.033 (T) <1 (-) 0 (-) >0.05
rs62279889 chr3:161015071 NMD3 [+43751bp] C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs73162599 chr3:161131499 SPTSSB [+40831bp] C - 13 A vs. G 0.017 (G) - >1 (-) 0 (-) >0.05
rs142075319 chr3:161116919 SPTSSB [+26251bp] C - 13 A vs. T - - >1 (-) 0 (-) >0.05
rs80260759 chr3:161079259 SPTSSB C - 13 T vs. C - 0.033 (C) >1 (-) 0 (-) >0.05
rs79201270 chr3:161078459 SPTSSB C - 13 T vs. C 0.017 (T) 0.033 (T) <1 (-) 0 (-) >0.05
rs78798041 chr3:161080395 SPTSSB C - 13 A vs. G 0.017 (A) - <1 (-) 0 (-) >0.05
rs146841811 chr3:161019039 SPTSSB [-43541bp] C - 7 T vs. C - - <1 (-) 0 (-) >0.05
rs141419781 chr3:161064157 SPTSSB C - 7 T vs. C - - <1 (-) 28 (-) >0.05
rs16832237 chr3:161108103 SPTSSB [+17435bp] C - 13 A vs. G 0.017 (A) - <1 (-) 0 (-) >0.05
rs75290771 chr3:161085102 SPTSSB C - 13 A vs. G - 0.042 (A) <1 (-) 0 (-) >0.05
rs73162584 chr3:161104369 SPTSSB [+13701bp] C - 13 A vs. G 0.017 (A) 0.025 (A) <1 (-) 0 (-) >0.05
rs77951921 chr3:161133804 SPTSSB [+43136bp] C - 8 T vs. C 0.008 (T) - >1 (-) 0 (-) >0.05
rs336546 chr3:161059617 SPTSSB [-2963bp] C - 12 T vs. C 0.133 (C) 0.192 (C) >1 (-) 0 (-) >0.05
rs62279928 chr3:161090322 SPTSSB C - 8 A vs. G 0.025 (G) - >1 (-) 0 (-) >0.05
rs6441375 chr3:161068730 SPTSSB C - 7 T vs. C - 0.083 (C) >1 (-) 0 (-) >0.05
rs74448484 chr3:161135122 SPTSSB [+44454bp] C - 13 A vs. G 0.017 (A) - <1 (-) 0 (-) >0.05
rs9812574 chr3:161054351 SPTSSB [-8229bp] C - 7 A vs. G - - <1 (-) 0 (-) >0.05
rs9835530 chr3:161069141 SPTSSB C - 7 A vs. G - 0.05 (A) <1 (-) 0 (-) >0.05
rs80068062 chr3:161073062 SPTSSB C - 12 T vs. C - 0.033 (C) >1 (-) 0 (-) >0.05
rs7651924 chr3:161069101 SPTSSB C - 7 A vs. G - 0.1 (G) >1 (-) 0 (-) >0.05
rs9855572 chr3:161069269 SPTSSB C - 7 T vs. C - 0.067 (C) >1 (-) 0 (-) >0.05

Association studies for this region [+]