TAP2, chr6:32789610-32806557 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9276627 chr6:32743835 HLA-DQB2 [+12524bp] All: C 103,235 14 C vs. T - - 1.16 (1.09-1.23) 3 (0-56) 4.81e-06
Meta_image?name=rs9276627

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs28893527 chr6:32747592 HLA-DQB2 [+16281bp] C - 12 T vs. C 0.092 (T) - >1 (-) 0 (-) >0.05
rs2621410 chr6:32746170 HLA-DQB2 [+14859bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs28986399 chr6:32754593 HLA-DQB2 [+23282bp] C - 12 T vs. G 0.092 (G) - <1 (-) 0 (-) >0.05
rs28893536 chr6:32749659 HLA-DQB2 [+18348bp] C - 12 T vs. C 0.083 (T) 0.008 (T) >1 (-) 0 (-) >0.05
rs28893537 chr6:32749666 HLA-DQB2 [+18355bp] C - 12 T vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs28986354 chr6:32750983 HLA-DQB2 [+19672bp] C - 12 A vs. T 0.092 (T) - <1 (-) 0 (-) >0.05
rs28986337 chr6:32748398 HLA-DQB2 [+17087bp] C - 12 T vs. C 0.067 (T) - >1 (-) 0 (-) >0.05
rs28986347 chr6:32749109 HLA-DQB2 [+17798bp] C - 12 A vs. G 0.092 (G) - <1 (-) 0 (-) >0.05
rs28986332 chr6:32747678 HLA-DQB2 [+16367bp] C - 12 C vs. G 0.092 (C) 0.008 (C) >1 (-) 0 (-) >0.05
rs28893547 chr6:32750216 HLA-DQB2 [+18905bp] C - 12 T vs. C 0.092 (A) - >1 (-) 20 (-) >0.05
rs12661352 chr6:32745527 HLA-DQB2 [+14216bp] C - 12 T vs. G 0.092 (T) - >1 (-) 0 (-) >0.05
rs56016827 chr6:32818453 PSMB9 C - 12 A vs. G 0.017 (A) - >1 (-) 21 (-) >0.05
rs16871037 chr6:32819225 PSMB9 C - 12 C vs. G - - <1 (-) 20 (-) >0.05
rs9276912 chr6:32851463 PSMB9 [+24101bp] C - 12 A vs. G 0.308 (A) 0.267 (A) >1 (-) 0 (-) >0.05
rs34153000 chr6:32747016 HLA-DQB2 [+15705bp] C - 12 A vs. C 0.05 (A) - <1 (-) 19 (-) >0.05
rs28986338 chr6:32748810 HLA-DQB2 [+17499bp] C - 12 T vs. C 0.083 (T) - >1 (-) 0 (-) >0.05
rs6457690 chr6:32855717 PSMB9 [+28355bp] C - 12 A vs. G 0.075 (A) 0.075 (A) >1 (-) 0 (-) >0.05
rs28893544 chr6:32749984 HLA-DQB2 [+18673bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs28986355 chr6:32751105 HLA-DQB2 [+19794bp] C - 12 A vs. G 0.092 (G) - <1 (-) 0 (-) >0.05
rs9276898 chr6:32848133 PSMB9 [+20771bp] C - 12 T vs. C 0.308 (C) 0.258 (C) <1 (-) 0 (-) >0.05
rs28986422 chr6:32757724 HLA-DOB [-22816bp] C - 12 T vs. C 0.1 (C) - <1 (-) 0 (-) >0.05
rs28986421 chr6:32757598 HLA-DOB [-22942bp] C - 12 A vs. G 0.092 (G) - <1 (-) 0 (-) >0.05
rs12661326 chr6:32745435 HLA-DQB2 [+14124bp] C - 12 T vs. C 0.108 (T) - >1 (-) 0 (-) >0.05
rs12660559 chr6:32758774 HLA-DOB [-21766bp] C - 12 T vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs28893534 chr6:32749561 HLA-DQB2 [+18250bp] C - 12 T vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs28893526 chr6:32747331 HLA-DQB2 [+16020bp] C - 12 C vs. G 0.092 (G) - <1 (-) 0 (-) >0.05
rs13204139 chr6:32752685 HLA-DQB2 [+21374bp] C - 12 A vs. G 0.092 (A) - >1 (-) 0 (-) >0.05
rs11965854 chr6:32779164 HLA-DOB [-1376bp] C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs13203652 chr6:32752504 HLA-DQB2 [+21193bp] C - 12 T vs. C 0.1 (T) - >1 (-) 0 (-) >0.05
rs13203642 chr6:32752477 HLA-DQB2 [+21166bp] C - 12 T vs. C 0.092 (T) - >1 (-) 0 (-) >0.05
rs28986378 chr6:32752242 HLA-DQB2 [+20931bp] C - 12 A vs. C 0.092 (A) - >1 (-) 0 (-) >0.05
rs115429670 chr6:32826338 PSMB9 C - 9 T vs. C 0.008 (C) - <1 (-) 62 (-) >0.05
rs13198307 chr6:32756486 HLA-DOB [-24054bp] C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs13197975 chr6:32756480 HLA-DOB [-24060bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs28893557 chr6:32750859 HLA-DQB2 [+19548bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs28893558 chr6:32750865 HLA-DQB2 [+19554bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs13201537 chr6:32756857 HLA-DOB [-23683bp] C - 12 A vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs1480383 chr6:32740856 HLA-DQB2 [+9545bp] C - 12 A vs. C 0.208 (C) 0.317 (C) >1 (-) 0 (-) >0.05
rs28986423 chr6:32758843 HLA-DOB [-21697bp] C - 12 A vs. G 0.092 (A) - >1 (-) 0 (-) >0.05
rs28986356 chr6:32751185 HLA-DQB2 [+19874bp] C - 12 C vs. G 0.092 (C) - >1 (-) 0 (-) >0.05
rs2857181 chr6:32751236 HLA-DQB2 [+19925bp] C - 12 T vs. C 0.292 (C) 0.433 (C) <1 (-) 4 (-) >0.05
rs28893562 chr6:32755918 HLA-DQB2 [+24607bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs13198109 chr6:32756575 HLA-DOB [-23965bp] C - 12 A vs. G 0.083 (G) 0.008 (G) <1 (-) 0 (-) >0.05
rs28986358 chr6:32751228 HLA-DQB2 [+19917bp] C - 12 A vs. T 0.092 (T) - <1 (-) 0 (-) >0.05
rs2097292 chr6:32779803 HLA-DOB [-737bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs4526239 chr6:32777430 HLA-DOB [-3110bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs55781756 chr6:32795706 TAP2 C - 12 A vs. G 0.067 (A) 0.067 (A) >1 (-) 56 (-) >0.05
rs2157081 chr6:32761776 HLA-DOB [-18764bp] C - 12 A vs. G 0.392 (G) 0.25 (G) >1 (-) 8 (-) >0.05
rs13197854 chr6:32756385 HLA-DOB [-24155bp] C - 12 A vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs28986367 chr6:32751800 HLA-DQB2 [+20489bp] C - 12 T vs. C 0.092 (T) - >1 (-) 0 (-) >0.05

Association studies for this region [+]