TAP2, chr6:32789610-32806557 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9276627 chr6:32743835 HLA-DQB2 [+12524bp] All: C 103,235 14 C vs. T - - 1.16 (1.09-1.23) 3 (0-56) 4.81e-06
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs8842 chr6:32813161 PSMB9 C - 12 C vs. G - - >1 (-) 2 (-) >0.05
rs28986357 chr6:32751192 HLA-DQB2 [+19881bp] C - 12 A vs. G 0.092 (A) - >1 (-) 0 (-) >0.05
rs114595701 chr6:32807490 TAP2 [+933bp] C - 12 T vs. C 0.075 (T) - <1 (-) 11 (-) >0.05
rs13197727 chr6:32756292 HLA-DOB [-24248bp] C - 12 A vs. G 0.092 (G) - <1 (-) 0 (-) >0.05
rs11967649 chr6:32777849 HLA-DOB [-2691bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
chr6:32800961 chr6:32800961 TAP2 C - 8 A vs. T - - <1 (-) 0 (-) >0.05
rs28986359 chr6:32751349 HLA-DQB2 [+20038bp] C - 12 C vs. G 0.092 (C) - >1 (-) 0 (-) >0.05
rs28986370 chr6:32751960 HLA-DQB2 [+20649bp] C - 12 A vs. G 0.092 (A) - >1 (-) 0 (-) >0.05
rs28986371 chr6:32752006 HLA-DQB2 [+20695bp] C - 12 T vs. C 0.092 (T) - >1 (-) 0 (-) >0.05
rs7743252 chr6:32843721 PSMB9 [+16359bp] C - 11 C vs. G - - <1 (-) 0 (-) >0.05
rs28986360 chr6:32751370 HLA-DQB2 [+20059bp] C - 12 A vs. C 0.092 (A) - >1 (-) 0 (-) >0.05
rs17429127 chr6:32751614 HLA-DQB2 [+20303bp] C - 12 C vs. G 0.092 (C) - >1 (-) 0 (-) >0.05
rs28986362 chr6:32751451 HLA-DQB2 [+20140bp] C - 12 C vs. G 0.092 (G) - <1 (-) 0 (-) >0.05
rs28986363 chr6:32751555 HLA-DQB2 [+20244bp] C - 12 A vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs9276623 chr6:32743640 HLA-DQB2 [+12329bp] C - 12 A vs. G 0.192 (A) - <1 (-) 0 (-) >0.05
rs71565350 chr6:32828175 PSMB9 [+813bp] C - 10 A vs. C - - <1 (-) 0 (-) >0.05
rs9276817 chr6:32828156 PSMB9 [+794bp] C - 12 T vs. C 0.308 (T) 0.15 (T) >1 (-) 0 (-) >0.05
rs17220241 chr6:32822244 PSMB9 C - 12 T vs. G 0.017 (T) - >1 (-) 20 (-) >0.05
rs116698931 chr6:32854706 PSMB9 [+27344bp] C - 12 T vs. G 0.025 (T) 0.025 (T) >1 (-) 34 (-) >0.05
rs28986373 chr6:32752150 HLA-DQB2 [+20839bp] C - 12 A vs. C 0.092 (A) - >1 (-) 0 (-) >0.05
rs28986379 chr6:32752357 HLA-DQB2 [+21046bp] C - 12 T vs. G 0.092 (T) - >1 (-) 0 (-) >0.05
rs28986372 chr6:32752130 HLA-DQB2 [+20819bp] C - 12 A vs. T 0.092 (T) - <1 (-) 0 (-) >0.05
rs28986420 chr6:32757468 HLA-DOB [-23072bp] C - 12 T vs. C 0.092 (T) - >1 (-) 0 (-) >0.05
rs2105843 chr6:32779973 HLA-DOB [-567bp] C - 12 A vs. T - - >1 (-) 0 (-) >0.05
rs28986416 chr6:32755506 HLA-DQB2 [+24195bp] C - 12 C vs. G - - <1 (-) 0 (-) >0.05
rs2857126 chr6:32777140 HLA-DOB [-3400bp] C - 11 T vs. C 0.392 (C) 0.25 (C) >1 (-) 23 (-) >0.05
rs147640113 chr6:32815066 PSMB9 C - 4 T vs. C - - <1 (-) 15 (-) >0.05
rs60066220 chr6:32789280 TAP2 [-330bp] C - 11 A vs. C - - <1 (-) 21 (-) >0.05
rs140949164 chr6:32839311 PSMB9 [+11949bp] C - 9 A vs. C - - <1 (-) 62 (-) >0.05
rs73737377 chr6:32778361 HLA-DOB [-2179bp] C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs9276899 chr6:32848168 PSMB9 [+20806bp] C - 12 T vs. C 0.308 (T) 0.258 (T) >1 (-) 0 (-) >0.05
rs73737294 chr6:32776898 HLA-DOB [-3642bp] C - 12 A vs. G - 0.008 (G) <1 (-) 0 (-) >0.05
rs115482851 chr6:32833537 PSMB9 [+6175bp] C - 12 C vs. G 0.008 (C) - >1 (-) 0 (-) >0.05
rs116052792 chr6:32855894 PSMB9 [+28532bp] C - 7 T vs. C - - <1 (-) 55 (-) >0.05
rs28893548 chr6:32750217 HLA-DQB2 [+18906bp] C - 12 A vs. G 0.092 (A) - >1 (-) 0 (-) >0.05
rs9501223 chr6:32776497 HLA-DOB [-4043bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs115074026 chr6:32835994 PSMB9 [+8632bp] C - 12 T vs. C 0.025 (C) - <1 (-) 31 (-) >0.05
rs28986335 chr6:32748137 HLA-DQB2 [+16826bp] C - 12 A vs. T 0.092 (T) - <1 (-) 0 (-) >0.05
rs116696906 chr6:32824909 PSMB9 C - 12 A vs. G 0.008 (A) - >1 (-) 0 (-) >0.05
rs11540142 chr6:32814113 PSMB9 C - 12 A vs. G 0.017 (A) - >1 (-) 6 (-) >0.05
rs2894294 chr6:32760965 HLA-DOB [-19575bp] C - 12 A vs. G 0.392 (G) 0.258 (G) >1 (-) 13 (-) >0.05
rs2894297 chr6:32779352 HLA-DOB [-1188bp] C - 12 A vs. C - - <1 (-) 0 (-) >0.05
rs2097294 chr6:32779583 HLA-DOB [-957bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs2097293 chr6:32779642 HLA-DOB [-898bp] C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs28986334 chr6:32748021 HLA-DQB2 [+16710bp] C - 12 T vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs2395267 chr6:32779292 HLA-DOB [-1248bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs2894296 chr6:32779276 HLA-DOB [-1264bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs28986412 chr6:32755327 HLA-DQB2 [+24016bp] C - 12 A vs. T 0.092 (T) - <1 (-) 0 (-) >0.05
rs28986413 chr6:32755375 HLA-DQB2 [+24064bp] C - 12 T vs. G 0.092 (G) - <1 (-) 0 (-) >0.05
rs6905122 chr6:32793957 TAP2 C - 11 T vs. C 0.017 (C) - <1 (-) 0 (-) >0.05

Association studies for this region [+]