TAP2, chr6:32789610-32806557 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9276627 chr6:32743835 HLA-DQB2 [+12524bp] All: C 103,235 14 C vs. T - - 1.16 (1.09-1.23) 3 (0-56) 4.81e-06
Meta_image?name=rs9276627

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9276894 chr6:32846483 PSMB9 [+19121bp] C - 12 C vs. G 0.3 (C) 0.258 (C) >1 (-) 0 (-) >0.05
rs56278853 chr6:32781148 HLA-DOB C - 10 T vs. C - 0.058 (C) >1 (-) 0 (-) >0.05
rs28744288 chr6:32774318 HLA-DOB [-6222bp] C - 12 A vs. G 0.092 (A) - >1 (-) 0 (-) >0.05
rs9276720 chr6:32761939 HLA-DOB [-18601bp] C - 12 C vs. G 0.092 (G) 0.008 (G) <1 (-) 0 (-) >0.05
rs114375435 chr6:32853159 PSMB9 [+25797bp] C - 5 A vs. G 0.008 (A) - >1 (-) 10 (-) >0.05
rs2621334 chr6:32778052 HLA-DOB [-2488bp] C - 12 A vs. C 0.392 (A) 0.242 (A) <1 (-) 16 (-) >0.05
rs114716456 chr6:32851674 PSMB9 [+24312bp] C - 4 A vs. G - - >1 (-) 44 (-) >0.05
rs9276897 chr6:32847972 PSMB9 [+20610bp] C - 12 C vs. G 0.3 (G) 0.267 (G) <1 (-) 0 (-) >0.05
rs6928398 chr6:32838269 PSMB9 [+10907bp] C - 12 T vs. C 0.308 (C) 0.275 (C) <1 (-) 0 (-) >0.05
rs9276845 chr6:32840139 PSMB9 [+12777bp] C - 12 A vs. G 0.308 (G) 0.275 (G) <1 (-) 0 (-) >0.05
rs2857107 chr6:32785515 HLA-DOB [+690bp] C - 12 T vs. C 0.108 (T) 0.15 (T) >1 (-) 0 (-) >0.05
rs28744289 chr6:32774920 HLA-DOB [-5620bp] C - 12 T vs. G 0.092 (T) 0.058 (T) >1 (-) 0 (-) >0.05
rs2857137 chr6:32775602 HLA-DOB [-4938bp] C - 12 A vs. G 0.392 (A) 0.25 (A) <1 (-) 14 (-) >0.05
rs56115039 chr6:32805439 TAP2 C - 11 A vs. C - 0.025 (A) >1 (-) 13 (-) >0.05
rs11965958 chr6:32770663 HLA-DOB [-9877bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs9501201 chr6:32746264 HLA-DQB2 [+14953bp] C - 12 T vs. G - - >1 (-) 0 (-) >0.05
rs2621413 chr6:32742531 HLA-DQB2 [+11220bp] C - 12 T vs. G 0.35 (G) 0.292 (G) >1 (-) 10 (-) >0.05
rs45574138 chr6:32812705 PSMB9 C - 12 A vs. G - - >1 (-) 20 (-) >0.05
rs9276644 chr6:32745043 HLA-DQB2 [+13732bp] C - 12 T vs. C 0.267 (C) 0.258 (C) >1 (-) 0 (-) >0.05
rs2621323 chr6:32788707 TAP2 [-903bp] C - 12 A vs. G 0.367 (G) 0.475 (G) <1 (-) 0 (-) >0.05
rs9276646 chr6:32745200 HLA-DQB2 [+13889bp] C - 12 A vs. T 0.267 (T) 0.25 (T) >1 (-) 0 (-) >0.05
rs7760168 chr6:32746051 HLA-DQB2 [+14740bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs2857113 chr6:32780201 HLA-DOB [-339bp] C - 11 T vs. C 0.392 (C) 0.25 (C) <1 (-) 9 (-) >0.05
rs9276728 chr6:32764042 HLA-DOB [-16498bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs3101941 chr6:32775563 HLA-DOB [-4977bp] C - 12 A vs. G 0.392 (A) 0.25 (A) <1 (-) 11 (-) >0.05
rs2857161 chr6:32759297 HLA-DOB [-21243bp] C - 12 A vs. G 0.433 (G) 0.25 (G) <1 (-) 12 (-) >0.05
rs2071468 chr6:32785035 HLA-DOB [+210bp] C - 12 A vs. G 0.05 (G) 0.125 (G) >1 (-) 0 (-) >0.05
rs1894408 chr6:32786833 HLA-DOB [+2008bp] C - 12 C vs. G 0.4 (G) 0.467 (C) >1 (-) 0 (-) >0.05
rs6929078 chr6:32838664 PSMB9 [+11302bp] C - 12 T vs. C 0.308 (C) 0.275 (C) <1 (-) 0 (-) >0.05
rs9276862 chr6:32841800 PSMB9 [+14438bp] C - 12 T vs. G - - <1 (-) 0 (-) >0.05
rs9276721 chr6:32762309 HLA-DOB [-18231bp] C - 12 T vs. C 0.092 (T) - >1 (-) 0 (-) >0.05
rs9276882 chr6:32844523 PSMB9 [+17161bp] C - 12 A vs. G 0.308 (A) 0.258 (A) >1 (-) 0 (-) >0.05
rs9276846 chr6:32840369 PSMB9 [+13007bp] C - 12 A vs. G 0.3 (G) 0.275 (G) <1 (-) 0 (-) >0.05
rs9276847 chr6:32840384 PSMB9 [+13022bp] C - 12 T vs. C 0.292 (T) 0.275 (T) >1 (-) 0 (-) >0.05
rs72860340 chr6:32820137 PSMB9 C - 12 T vs. C 0.025 (T) 0.017 (T) >1 (-) 33 (-) >0.05
rs1580345 chr6:32837696 PSMB9 [+10334bp] C - 12 A vs. C 0.308 (C) 0.275 (C) <1 (-) 0 (-) >0.05
rs9276722 chr6:32762391 HLA-DOB [-18149bp] C - 12 A vs. G 0.092 (G) - <1 (-) 0 (-) >0.05
rs2857116 chr6:32778153 HLA-DOB [-2387bp] C - 12 A vs. G 0.392 (A) 0.242 (A) <1 (-) 16 (-) >0.05
rs17213819 chr6:32815966 PSMB9 C - 12 C vs. G - - >1 (-) 13 (-) >0.05
rs2621415 chr6:32741894 HLA-DQB2 [+10583bp] C - 12 T vs. C 0.342 (T) 0.292 (T) <1 (-) 11 (-) >0.05
rs2621383 chr6:32759335 HLA-DOB [-21205bp] C - 12 A vs. C 0.433 (C) 0.2 (C) <1 (-) 12 (-) >0.05
rs9276632 chr6:32744429 HLA-DQB2 [+13118bp] C - 12 T vs. C 0.417 (C) 0.275 (C) >1 (-) 9 (-) >0.05
rs9276655 chr6:32746574 HLA-DQB2 [+15263bp] C - 12 A vs. G - - >1 (-) 20 (-) >0.05
rs9276843 chr6:32839749 PSMB9 [+12387bp] C - 12 A vs. G 0.308 (G) 0.267 (G) <1 (-) 0 (-) >0.05
rs9276729 chr6:32764246 HLA-DOB [-16294bp] C - 12 A vs. G 0.092 (A) 0.008 (A) >1 (-) 0 (-) >0.05
rs6905477 chr6:32838228 PSMB9 [+10866bp] C - 12 A vs. G 0.308 (G) 0.275 (G) <1 (-) 0 (-) >0.05
rs2857211 chr6:32740442 HLA-DQB2 [+9131bp] C - 12 A vs. G 0.4 (A) 0.25 (A) <1 (-) 2 (-) >0.05
rs56026259 chr6:32816402 PSMB9 C - 12 T vs. G - - <1 (-) 12 (-) >0.05
rs9276724 chr6:32763635 HLA-DOB [-16905bp] C - 12 T vs. C 0.092 (T) - >1 (-) 0 (-) >0.05
rs2857174 chr6:32754768 HLA-DQB2 [+23457bp] C - 12 T vs. C 0.433 (T) 0.242 (T) <1 (-) 5 (-) >0.05

Association studies for this region [+]