TAP2, chr6:32789610-32806557 +/- 50000 base pairs
View on:

Most significant meta-analysis in this region
Append your own data and create meta-analysis

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9276627 chr6:32743835 HLA-DQB2 [+12524bp] All: C 103,235 14 C vs. T - - 1.16 (1.09-1.23) 3 (0-56) 4.81e-06
Meta_image?name=rs9276627

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9501202 chr6:32746284 HLA-DQB2 [+14973bp] C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs9276725 chr6:32763818 HLA-DOB [-16722bp] C - 12 T vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs7757767 chr6:32845873 PSMB9 [+18511bp] C - 12 A vs. G 0.308 (G) 0.267 (G) <1 (-) 0 (-) >0.05
rs28361064 chr6:32783295 HLA-DOB C - 12 T vs. G 0.092 (G) - <1 (-) 0 (-) >0.05
rs9276852 chr6:32840702 PSMB9 [+13340bp] C - 12 C vs. G 0.308 (G) 0.275 (G) <1 (-) 0 (-) >0.05
rs73739312 chr6:32765213 HLA-DOB [-15327bp] C - 12 A vs. G - 0.008 (G) <1 (-) 0 (-) >0.05
rs9276853 chr6:32840753 PSMB9 [+13391bp] C - 12 T vs. C 0.308 (C) 0.275 (C) <1 (-) 0 (-) >0.05
rs9282328 chr6:32841096 PSMB9 [+13734bp] C - 12 A vs. T - - >1 (-) 0 (-) >0.05
rs9276884 chr6:32844970 PSMB9 [+17608bp] C - 12 A vs. G 0.308 (A) 0.267 (A) >1 (-) 0 (-) >0.05
rs2071473 chr6:32782605 HLA-DOB C - 12 T vs. C 0.4 (T) 0.483 (T) >1 (-) 0 (-) >0.05
rs9276834 chr6:32836759 PSMB9 [+9397bp] C - 12 T vs. C 0.317 (T) 0.275 (T) >1 (-) 0 (-) >0.05
rs117586629 chr6:32739975 HLA-DQB2 [+8664bp] C - 9 A vs. C - 0.1 (A) <1 (-) 0 (-) >0.05
rs11964486 chr6:32768718 HLA-DOB [-11822bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs2127676 chr6:32849841 PSMB9 [+22479bp] C - 12 C vs. G 0.308 (C) 0.267 (C) >1 (-) 0 (-) >0.05
rs28986352 chr6:32750656 HLA-DQB2 [+19345bp] C - 12 A vs. G 0.083 (G) - >1 (-) 0 (-) >0.05
rs28986351 chr6:32750650 HLA-DQB2 [+19339bp] C - 12 T vs. C 0.083 (T) - <1 (-) 0 (-) >0.05
rs2857159 chr6:32760257 HLA-DOB [-20283bp] C - 12 T vs. C 0.425 (T) 0.258 (T) <1 (-) 12 (-) >0.05
rs2857160 chr6:32760249 HLA-DOB [-20291bp] C - 12 T vs. G 0.408 (T) 0.258 (T) <1 (-) 12 (-) >0.05
rs17220017 chr6:32769557 HLA-DOB [-10983bp] C - 12 C vs. G - - >1 (-) 0 (-) >0.05
rs9276723 chr6:32763405 HLA-DOB [-17135bp] C - 12 A vs. G 0.092 (G) - <1 (-) 0 (-) >0.05
rs9276714 chr6:32760318 HLA-DOB [-20222bp] C - 11 A vs. G 0.092 (G) - <1 (-) 0 (-) >0.05
rs113944821 chr6:32852887 PSMB9 [+25525bp] C - 4 T vs. C - - <1 (-) 43 (-) >0.05
rs2621331 chr6:32780470 HLA-DOB [-70bp] C - 12 T vs. C 0.4 (C) 0.308 (C) >1 (-) 21 (-) >0.05
rs2187685 chr6:32764315 HLA-DOB [-16225bp] C - 12 T vs. C 0.483 (T) 0.258 (T) <1 (-) 20 (-) >0.05
rs2621379 chr6:32762792 HLA-DOB [-17748bp] C - 12 A vs. G 0.483 (G) 0.258 (G) >1 (-) 17 (-) >0.05
rs2857153 chr6:32762641 HLA-DOB [-17899bp] C - 12 T vs. C 0.483 (C) 0.258 (C) >1 (-) 17 (-) >0.05
rs6904838 chr6:32834664 PSMB9 [+7302bp] C - 12 A vs. T 0.308 (A) 0.275 (A) >1 (-) 0 (-) >0.05
rs9276628 chr6:32743861 HLA-DQB2 [+12550bp] C - 12 A vs. G 0.35 (G) 0.233 (G) >1 (-) 7 (-) >0.05
rs2157082 chr6:32760714 HLA-DOB [-19826bp] C - 12 T vs. G 0.475 (G) 0.258 (G) >1 (-) 16 (-) >0.05
rs9276615 chr6:32743217 HLA-DQB2 [+11906bp] C - 12 T vs. C 0.35 (C) 0.233 (C) >1 (-) 4 (-) >0.05
rs2071547 chr6:32785029 HLA-DOB [+204bp] C - 12 T vs. C 0.05 (C) 0.125 (C) >1 (-) 0 (-) >0.05
rs115591082 chr6:32844103 PSMB9 [+16741bp] C - 12 A vs. G 0.075 (G) - >1 (-) 33 (-) >0.05
rs2857210 chr6:32741742 HLA-DQB2 [+10431bp] C - 12 A vs. G 0.35 (A) 0.292 (A) <1 (-) 11 (-) >0.05
rs2621326 chr6:32783896 HLA-DOB C - 12 A vs. G 0.433 (A) 0.392 (G) <1 (-) 0 (-) >0.05
rs2856995 chr6:32783337 HLA-DOB C - 12 A vs. T 0.433 (A) 0.392 (T) <1 (-) 0 (-) >0.05
rs2621380 chr6:32761353 HLA-DOB [-19187bp] C - 12 T vs. C 0.483 (C) 0.25 (C) >1 (-) 15 (-) >0.05
rs149885191 chr6:32854180 PSMB9 [+26818bp] C - 4 T vs. C - - <1 (-) 42 (-) >0.05
rs9276885 chr6:32845145 PSMB9 [+17783bp] C - 12 C vs. G 0.292 (C) 0.25 (C) >1 (-) 0 (-) >0.05
rs9276886 chr6:32845168 PSMB9 [+17806bp] C - 12 T vs. C 0.308 (C) 0.25 (C) <1 (-) 0 (-) >0.05
rs7767757 chr6:32853374 PSMB9 [+26012bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs2857201 chr6:32745156 HLA-DQB2 [+13845bp] C - 12 C vs. G 0.342 (C) 0.233 (C) <1 (-) 10 (-) >0.05
rs2170183 chr6:32745324 HLA-DQB2 [+14013bp] C - 12 T vs. C 0.342 (T) 0.233 (T) <1 (-) 10 (-) >0.05
rs2857199 chr6:32746012 HLA-DQB2 [+14701bp] C - 12 A vs. G - - <1 (-) 13 (-) >0.05
rs111618675 chr6:32854461 PSMB9 [+27099bp] C - 4 T vs. C - - <1 (-) 42 (-) >0.05
rs116069146 chr6:32833563 PSMB9 [+6201bp] C - 12 T vs. C 0.008 (C) - >1 (-) 0 (-) >0.05
rs56020058 chr6:32816959 PSMB9 C - 12 T vs. C 0.017 (T) - >1 (-) 1 (-) >0.05
rs7765772 chr6:32842484 PSMB9 [+15122bp] C - 12 T vs. C 0.308 (T) 0.275 (T) >1 (-) 0 (-) >0.05
rs2621411 chr6:32744321 HLA-DQB2 [+13010bp] C - 12 T vs. C 0.367 (T) 0.233 (T) <1 (-) 9 (-) >0.05
rs56219567 chr6:32803574 TAP2 C - 11 A vs. G - - >1 (-) 15 (-) >0.05
rs9276861 chr6:32841729 PSMB9 [+14367bp] C - 12 A vs. G 0.308 (A) 0.275 (A) >1 (-) 0 (-) >0.05

Association studies for this region [+]