VAMP4, chr1:171669300-171711387 +/- 50000 base pairs
View on:

Most significant meta-analysis in this region
Append your own data and create meta-analysis

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs10913565 chr1:171706706 VAMP4 All: C 108,990 15 G vs. A 0.133 (G) 0.142 (G) 0.91 (0.88-0.95) 0 (0-50) 5.35e-06
Meta_image?name=rs10913565

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6674774 chr1:171699078 VAMP4 All: C 108,990 15 A vs. C 0.242 (A) 0.367 (A) 0.93 (0.90-0.97) 36 (0-66) 9.05e-05
rs10913497 chr1:171657015 VAMP4 [-12285bp] All: C 103,470 14 T vs. C - - 1.10 (1.05-1.15) 9 (0-47) 9.42e-05
rs11801283 chr1:171649458 VAMP4 [-19842bp] All: C 108,990 15 T vs. C 0.125 (T) 0.142 (T) 0.92 (0.88-0.96) 21 (0-57) 9.77e-05
rs6668623 chr1:171691714 VAMP4 All: C 108,990 15 C vs. T - - 1.07 (1.03-1.11) 37 (0-66) 9.82e-05
rs10913508 chr1:171668479 VAMP4 [-821bp] All: C 108,990 15 C vs. T 0.25 (C) 0.35 (C) 0.94 (0.90-0.97) 41 (0-68) 1.21e-04
rs113749082 chr1:171655845 VAMP4 [-13455bp] All: C 103,470 14 A vs. G - - 1.09 (1.04-1.15) 8 (0-46) 4.00e-04
rs3766653 chr1:171689156 VAMP4 C - 13 A vs. T 0.15 (T) 0.167 (T) >1 (-) 4 (-) <0.05
rs74883952 chr1:171700047 VAMP4 C - 13 A vs. T 0.125 (T) 0.158 (T) >1 (-) 2 (-) <0.05
rs17649050 chr1:171713808 VAMP4 [+2421bp] C - 13 C vs. G 0.125 (C) 0.2 (C) <1 (-) 2 (-) <0.05
rs11577745 chr1:171720909 VAMP4 [+9522bp] C - 13 C vs. G 0.133 (C) 0.2 (C) <1 (-) 0 (-) <0.05
rs17649250 chr1:171720586 VAMP4 [+9199bp] C - 13 C vs. G 0.133 (C) 0.2 (C) <1 (-) 0 (-) <0.05
rs10489249 chr1:171714521 VAMP4 [+3134bp] C - 13 C vs. G 0.133 (G) 0.183 (G) >1 (-) 0 (-) <0.05
rs10913625 chr1:171732378 METTL13 [-18410bp] C - 13 T vs. G 0.25 (T) 0.417 (G) <1 (-) 36 (-) <0.05
rs6688823 chr1:171733426 METTL13 [-17362bp] C - 13 C vs. G 0.25 (G) 0.417 (C) >1 (-) 35 (-) <0.05
rs7546974 chr1:171649597 VAMP4 [-19703bp] C - 13 A vs. C 0.217 (A) 0.275 (A) <1 (-) 39 (-) <0.05
rs10913514 chr1:171670823 VAMP4 C - 13 A vs. T 0.133 (A) 0.133 (A) <1 (-) 11 (-) <0.05
rs6694852 chr1:171650328 VAMP4 [-18972bp] C - 13 T vs. C - - <1 (-) 33 (-) <0.05
rs3981256 chr1:171664325 VAMP4 [-4975bp] C - 13 T vs. C - - <1 (-) 0 (-) <0.05
rs7536436 chr1:171665914 VAMP4 [-3386bp] C - 13 C vs. G 0.133 (G) 0.133 (G) >1 (-) 10 (-) <0.05
rs7536543 chr1:171666040 VAMP4 [-3260bp] C - 13 C vs. G 0.133 (G) 0.133 (G) >1 (-) 9 (-) <0.05
rs6679027 chr1:171733094 METTL13 [-17694bp] C - 13 T vs. G 0.25 (T) 0.417 (G) <1 (-) 32 (-) <0.05
rs112566773 chr1:171693036 VAMP4 C - 13 T vs. C - - <1 (-) 41 (-) <0.05
rs10798598 chr1:171668697 VAMP4 [-603bp] C - 13 A vs. G 0.242 (G) 0.383 (G) >1 (-) 42 (-) <0.05
rs6656003 chr1:171691154 VAMP4 C - 13 C vs. G - - <1 (-) 15 (-) <0.05
rs11590714 chr1:171716779 VAMP4 [+5392bp] C - 13 C vs. G 0.133 (C) 0.192 (C) <1 (-) 0 (-) <0.05
rs10798599 chr1:171671463 VAMP4 C - 13 T vs. G 0.25 (G) 0.375 (G) >1 (-) 43 (-) <0.05
rs75265199 chr1:171624814 MYOC [+2991bp] C - 10 T vs. C 0.033 (T) - >1 (-) 38 (-) <0.05
rs9943293 chr1:171654968 VAMP4 [-14332bp] C - 13 T vs. C 0.25 (T) 0.342 (T) <1 (-) 47 (-) <0.05
rs6665581 chr1:171721146 VAMP4 [+9759bp] C - 13 T vs. C 0.25 (T) 0.4 (T) <1 (-) 37 (-) <0.05
rs12120152 chr1:171723809 VAMP4 [+12422bp] C - 13 T vs. C 0.25 (T) 0.4 (T) <1 (-) 38 (-) <0.05
rs10913586 chr1:171717330 VAMP4 [+5943bp] C - 13 A vs. G 0.25 (G) - >1 (-) 36 (-) <0.05
rs150410853 chr1:171733071 METTL13 [-17717bp] C - 5 A vs. G - - <1 (-) 0 (-) <0.05
rs10913488 chr1:171653207 VAMP4 [-16093bp] C - 13 T vs. C 0.25 (T) 0.308 (T) <1 (-) 47 (-) <0.05
rs12096984 chr1:171708643 VAMP4 C - 13 T vs. C 0.25 (T) 0.35 (T) <1 (-) 33 (-) <0.05
rs6662836 chr1:171654728 VAMP4 [-14572bp] C - 13 A vs. C 0.25 (A) 0.342 (A) <1 (-) 46 (-) <0.05
rs144269048 chr1:171664555 VAMP4 [-4745bp] C - 12 A vs. G - - >1 (-) 0 (-) <0.05
rs11805692 chr1:171693357 VAMP4 C - 13 A vs. G - - <1 (-) 37 (-) <0.05
rs145819113 chr1:171664513 VAMP4 [-4787bp] C - 12 T vs. C - - <1 (-) 0 (-) <0.05
rs6659538 chr1:171653865 VAMP4 [-15435bp] C - 13 C vs. G 0.25 (G) 0.333 (G) >1 (-) 44 (-) <0.05
rs6659539 chr1:171653867 VAMP4 [-15433bp] C - 13 T vs. C 0.25 (T) 0.333 (T) <1 (-) 44 (-) <0.05
rs12063563 chr1:171649502 VAMP4 [-19798bp] C - 13 C vs. G 0.1 (G) 0.142 (G) >1 (-) 33 (-) <0.05
rs73041998 chr1:171655119 VAMP4 [-14181bp] C - 12 C vs. G 0.133 (G) 0.133 (G) >1 (-) 16 (-) <0.05
rs3753539 chr1:171716185 VAMP4 [+4798bp] C - 12 T vs. C 0.167 (T) 0.2 (T) <1 (-) 5 (-) <0.05
rs7545663 chr1:171731932 METTL13 [-18856bp] C - 13 T vs. G 0.5 (G) 0.2 (T) >1 (-) 0 (-) <0.05
rs6693493 chr1:171733322 METTL13 [-17466bp] C - 13 A vs. G 0.5 (A) 0.192 (A) >1 (-) 0 (-) <0.05
rs79495172 chr1:171624478 MYOC [+2655bp] C - 13 T vs. C 0.1 (T) 0.1 (T) <1 (-) 27 (-) <0.05
rs11800328 chr1:171649555 VAMP4 [-19745bp] C - 13 A vs. G 0.1 (A) 0.125 (A) <1 (-) 31 (-) <0.05
rs3820167 chr1:171688839 VAMP4 C - 13 A vs. G 0.458 (A) 0.425 (G) <1 (-) 29 (-) <0.05
rs73044003 chr1:171655656 VAMP4 [-13644bp] C - 12 A vs. T 0.083 (A) 0.125 (A) <1 (-) 19 (-) <0.05
rs113685218 chr1:171655705 VAMP4 [-13595bp] C - 12 C vs. G 0.075 (C) - <1 (-) 15 (-) <0.05

Association studies for this region [+]