BTNL2, chr6:32361740-32374905 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2395163 chr6:32387809 BTNL2 [+12904bp] All: C 103,235 14 C vs. T 0.283 (C) 0.1 (C) 0.87 (0.84-0.91) 0 (0-54) 5.00e-12
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9268759 chr6:32417704 HLA-DRA [+4881bp] All: C 103,235 14 C vs. T - - 1.08 (1.04-1.12) 0 (-) 9.44e-06
rs3763322 chr6:32406807 HLA-DRA [-812bp] All: C 103,235 14 A vs. G 0.392 (A) 0.467 (A) 0.93 (0.90-0.96) 0 (0-14) 1.04e-05
rs1980496 chr6:32340070 C6orf10 [+386bp] C - 12 T vs. C - - <1 (-) 0 (-) <1.00e-04
rs3129880 chr6:32408917 HLA-DRA All: C 103,235 14 C vs. T - - 0.92 (0.88-0.95) 42 (0-69) 1.11e-05
rs3129883 chr6:32410137 HLA-DRA All: C 103,235 14 T vs. C 0.267 (T) 0.167 (T) 1.08 (1.05-1.12) 47 (2-72) 1.20e-05
rs4355646 chr6:32386554 BTNL2 [+11649bp] All: C 103,235 14 C vs. T - - 1.08 (1.04-1.11) 0 (0-20) 1.33e-05
rs2294878 chr6:32367795 BTNL2 All: C 103,235 14 G vs. T 0.475 (G) 0.35 (T) 1.07 (1.04-1.11) 55 (19-76) 1.42e-05
rs14004 chr6:32407709 HLA-DRA All: C 103,235 14 A vs. C 0.4 (A) 0.45 (A) 0.93 (0.90-0.96) 0 (0-7) 1.44e-05
rs9268497 chr6:32375424 BTNL2 [+519bp] C - 12 A vs. G 0.342 (A) 0.492 (A) <1 (-) 0 (-) <1.00e-04
rs6926374 chr6:32409305 HLA-DRA All: C 103,235 14 G vs. A 0.475 (G) 0.358 (A) 0.93 (0.90-0.96) 0 (0-5) 1.46e-05
rs9268495 chr6:32375371 BTNL2 [+466bp] C - 12 A vs. T 0.342 (T) 0.492 (T) >1 (-) 0 (-) <1.00e-04
rs3129886 chr6:32410576 HLA-DRA All: C 103,235 14 T vs. C 0.267 (T) 0.167 (T) 1.08 (1.04-1.12) 48 (3-72) 1.58e-05
rs9268496 chr6:32375374 BTNL2 [+469bp] C - 12 A vs. G 0.342 (A) 0.492 (A) <1 (-) 0 (-) <1.00e-04
rs6931646 chr6:32409781 HLA-DRA All: C 103,235 14 T vs. C 0.467 (T) 0.358 (C) 0.93 (0.90-0.96) 0 (0-17) 1.62e-05
rs6911419 chr6:32409787 HLA-DRA All: C 103,235 14 C vs. T 0.467 (C) 0.358 (T) 0.93 (0.90-0.96) 0 (0-17) 1.64e-05
rs9268763 chr6:32418416 HLA-DRA [+5593bp] All: C 103,235 14 T vs. C 0.392 (T) 0.458 (C) 0.92 (0.89-0.96) 0 (0-16) 1.74e-05
rs2239804 chr6:32411523 HLA-DRA All: C 103,235 14 C vs. T 0.467 (C) 0.358 (T) 0.93 (0.90-0.96) 0 (0-8) 1.81e-05
rs9268764 chr6:32418561 HLA-DRA [+5738bp] All: C 103,235 14 C vs. T 0.45 (C) 0.458 (T) 0.93 (0.90-0.96) 0 (-) 1.91e-05
rs9268658 chr6:32410716 HLA-DRA All: C 103,235 14 A vs. G 0.467 (A) 0.358 (G) 0.93 (0.90-0.96) 0 (0-7) 2.01e-05
rs9268767 chr6:32419022 HLA-DRA [+6199bp] All: C 103,235 14 C vs. T 0.467 (C) 0.458 (T) 0.93 (0.90-0.96) 0 (-) 2.02e-05
rs9268492 chr6:32375280 BTNL2 [+375bp] C - 12 C vs. G 0.342 (G) 0.342 (G) >1 (-) 0 (-) <1.00e-04
rs9268493 chr6:32375330 BTNL2 [+425bp] C - 12 A vs. G 0.342 (A) 0.342 (A) <1 (-) 0 (-) <1.00e-04
rs9268568 chr6:32390904 BTNL2 [+15999bp] All: C 103,235 14 G vs. A - - 1.08 (1.04-1.11) 0 (0-23) 2.19e-05
rs6912728 chr6:32419547 HLA-DRA [+6724bp] All: C 103,235 14 T vs. G 0.442 (T) 0.467 (G) 0.93 (0.90-0.96) 0 (-) 2.26e-05
rs9268811 chr6:32424370 HLA-DRA [+11547bp] All: C 103,235 14 T vs. G 0.458 (T) 0.458 (G) 0.93 (0.89-0.96) 0 (-) 2.36e-05
rs9268768 chr6:32419291 HLA-DRA [+6468bp] All: C 103,235 14 T vs. C 0.467 (T) 0.458 (C) 0.93 (0.90-0.96) 0 (-) 2.43e-05
rs56357381 chr6:32368708 BTNL2 All: C 103,235 14 C vs. T - - 0.85 (0.79-0.92) 38 (0-67) 2.79e-05
rs3135395 chr6:32405192 HLA-DRA [-2427bp] All: C 103,235 14 T vs. G 0.333 (T) 0.317 (T) 1.07 (1.04-1.11) 52 (12-74) 2.84e-05
rs3135338 chr6:32401217 HLA-DRA [-6402bp] All: C 103,235 14 C vs. T 0.333 (C) 0.317 (C) 1.07 (1.04-1.11) 52 (12-74) 3.15e-05
rs3135336 chr6:32401829 HLA-DRA [-5790bp] All: C 103,235 14 G vs. A 0.342 (G) 0.317 (G) 1.07 (1.04-1.11) 51 (11-74) 3.22e-05
rs3129869 chr6:32405671 HLA-DRA [-1948bp] All: C 103,235 14 A vs. C 0.35 (A) 0.317 (A) 1.07 (1.04-1.11) 48 (3-72) 3.34e-05
rs6457588 chr6:32419908 HLA-DRA [+7085bp] All: C 103,235 14 C vs. A 0.458 (C) 0.45 (A) 0.93 (0.90-0.96) 0 (0-2) 3.49e-05
rs13201792 chr6:32344044 C6orf10 [+4360bp] All: C 103,235 14 C vs. T - - 0.74 (0.64-0.85) 0 (0-39) 3.57e-05
rs9268784 chr6:32420792 HLA-DRA [+7969bp] All: C 103,235 14 G vs. A - 0.458 (G) 1.08 (1.04-1.12) 0 (0-1) 3.65e-05
rs35855550 chr6:32418722 HLA-DRA [+5899bp] All: C 103,235 14 G vs. A - - 0.67 (0.56-0.81) 0 (0-52) 3.72e-05
rs2097441 chr6:32422259 HLA-DRA [+9436bp] All: C 103,235 14 C vs. A 0.458 (C) 0.458 (A) 0.93 (0.90-0.96) 0 (-) 4.01e-05
rs9268798 chr6:32421735 HLA-DRA [+8912bp] All: C 103,235 14 C vs. T 0.458 (C) 0.45 (T) 0.93 (0.89-0.96) 0 (0-4) 4.01e-05
rs12202658 chr6:32423609 HLA-DRA [+10786bp] All: C 103,235 14 C vs. A - - 1.08 (1.04-1.12) 0 (0-15) 4.03e-05
rs9268792 chr6:32421154 HLA-DRA [+8331bp] All: C 103,235 14 G vs. A 0.45 (G) 0.458 (A) 0.93 (0.90-0.96) 0 (0-1) 4.63e-05
rs9268809 chr6:32424265 HLA-DRA [+11442bp] All: C 103,235 14 C vs. T 0.467 (C) - 0.93 (0.90-0.96) 0 (0-2) 4.82e-05
rs9268808 chr6:32424176 HLA-DRA [+11353bp] All: C 103,235 14 T vs. G 0.467 (T) 0.458 (G) 0.93 (0.90-0.96) 0 (0-2) 4.83e-05
rs13198563 chr6:32360915 BTNL2 [-825bp] All: C 103,235 14 A vs. G - - 0.75 (0.65-0.86) 0 (0-40) 5.86e-05
rs6923872 chr6:32390857 BTNL2 [+15952bp] All: C 103,235 14 A vs. G 0.175 (A) - 1.10 (1.05-1.15) 52 (13-74) 6.62e-05
rs9268373 chr6:32334489 C6orf10 All: C 103,235 14 G vs. A - - 1.07 (1.04-1.11) 16 (0-54) 8.30e-05
rs9268780 chr6:32420489 HLA-DRA [+7666bp] All: C 103,235 14 G vs. A - - 1.08 (1.04-1.12) 0 (0-9) 8.31e-05
rs116522341 chr6:32367697 BTNL2 C - 8 C vs. G 0.1 (G) - >1 (-) 30 (-) <1.00e-04
rs17208818 chr6:32370568 BTNL2 All: C 103,235 14 C vs. T - - 0.75 (0.65-0.87) 0 (0-39) 9.15e-05
rs3129871 chr6:32406342 HLA-DRA [-1277bp] All: C 103,235 14 A vs. C 0.358 (A) 0.333 (A) 1.07 (1.03-1.10) 49 (5-72) 9.37e-05
rs9469112 chr6:32415153 HLA-DRA [+2330bp] All: C 103,235 14 T vs. C 0.192 (T) 0.125 (T) 1.09 (1.04-1.14) 62 (31-78) 9.95e-05
rs13191872 chr6:32375095 BTNL2 [+190bp] All: C 103,235 14 T vs. C - 0.008 (C) 0.75 (0.65-0.87) 0 (0-37) 1.02e-04

Association studies for this region [+]