BTNL2, chr6:32361740-32374905 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2395163 chr6:32387809 BTNL2 [+12904bp] All: C 103,235 14 C vs. T 0.283 (C) 0.1 (C) 0.87 (0.84-0.91) 0 (0-54) 5.00e-12
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9268790 chr6:32421010 HLA-DRA [+8187bp] All: C 103,235 14 A vs. G - - 1.08 (1.04-1.12) 0 (0-12) 1.10e-04
rs9268789 chr6:32420888 HLA-DRA [+8065bp] All: C 103,235 14 A vs. G - - 1.08 (1.04-1.12) 0 (0-2) 1.13e-04
rs28895058 chr6:32417265 HLA-DRA [+4442bp] All: C 103,235 14 G vs. A - - 0.91 (0.87-0.95) 61 (31-78) 1.16e-04
rs2073045 chr6:32339548 C6orf10 C - 12 A vs. G 0.408 (A) 0.033 (A) <1 (-) 0 (-) <0.05
rs9268685 chr6:32415464 HLA-DRA [+2641bp] C - 12 A vs. T 0.442 (T) 0.458 (A) >1 (-) 0 (-) <0.05
rs3129882 chr6:32409530 HLA-DRA C - 12 A vs. G 0.383 (G) 0.4 (A) <1 (-) 69 (-) <0.05
rs13218331 chr6:32411362 HLA-DRA All: C 103,235 14 C vs. A 0.183 (C) - 1.09 (1.04-1.14) 60 (28-78) 1.43e-04
rs3177928 chr6:32412435 HLA-DRA All: C 103,235 14 A vs. G 0.183 (A) 0.033 (A) 1.09 (1.04-1.14) 60 (28-78) 1.43e-04
rs9268557 chr6:32389305 BTNL2 [+14400bp] All: C 103,235 14 T vs. C 0.467 (T) 0.425 (T) 1.06 (1.03-1.10) 18 (0-56) 1.43e-04
rs9268687 chr6:32415540 HLA-DRA [+2717bp] C - 12 T vs. G 0.425 (T) 0.458 (G) <1 (-) 0 (-) <0.05
rs35313924 chr6:32421327 HLA-DRA [+8504bp] All: C 76,889 8 C vs. T - - 0.62 (0.49-0.80) 14 (0-57) 1.57e-04
rs3763321 chr6:32406704 HLA-DRA [-915bp] All: C 103,235 14 G vs. T - - 0.93 (0.89-0.96) 51 (10-73) 1.57e-04
rs34735516 chr6:32401237 HLA-DRA [-6382bp] All: C 99,286 13 G vs. A - - 0.74 (0.64-0.87) 0 (0-33) 1.62e-04
rs9268633 chr6:32406473 HLA-DRA [-1146bp] All: C 103,235 14 A vs. G 0.267 (A) 0.133 (A) 1.08 (1.04-1.12) 51 (9-73) 1.62e-04
rs17209042 chr6:32397660 HLA-DRA [-9959bp] All: C 99,286 13 T vs. C - - 0.74 (0.64-0.87) 0 (0-33) 1.67e-04
rs4959025 chr6:32313143 C6orf10 All: C 103,235 14 C vs. A 0.392 (C) 0.4 (C) 0.94 (0.91-0.97) 17 (0-55) 1.87e-04
rs28895130 chr6:32421026 HLA-DRA [+8203bp] All: C 103,235 14 C vs. T - - 0.90 (0.85-0.95) 65 (38-80) 1.88e-04
rs71565323 chr6:32412114 HLA-DRA All: C 99,286 13 C vs. T - 0.017 (T) 0.72 (0.60-0.85) 12 (0-51) 1.89e-04
rs3135341 chr6:32398748 HLA-DRA [-8871bp] All: C 103,235 14 C vs. A 0.25 (C) 0.15 (C) 1.08 (1.04-1.12) 53 (13-74) 1.92e-04
rs9268786 chr6:32420855 HLA-DRA [+8032bp] All: C 103,235 14 T vs. C - - 1.08 (1.04-1.12) 0 (0-3) 1.94e-04
rs28732216 chr6:32413978 HLA-DRA [+1155bp] All: C 103,235 14 C vs. A - - 0.92 (0.88-0.96) 59 (27-77) 1.95e-04
rs3129849 chr6:32397309 HLA-DRA [-10310bp] All: C 103,235 14 A vs. G 0.25 (A) 0.158 (A) 1.08 (1.04-1.12) 51 (9-73) 1.96e-04
rs28895062 chr6:32417406 HLA-DRA [+4583bp] All: C 103,235 14 C vs. T 0.192 (C) - 1.09 (1.04-1.15) 63 (33-79) 2.00e-04
rs4504509 chr6:32399159 HLA-DRA [-8460bp] All: C 103,235 14 T vs. C 0.25 (T) 0.15 (T) 1.08 (1.04-1.12) 51 (9-73) 2.00e-04
rs28895061 chr6:32417393 HLA-DRA [+4570bp] All: C 103,235 14 T vs. C 0.183 (T) 0.108 (T) 1.09 (1.04-1.15) 65 (38-80) 2.11e-04
rs13212922 chr6:32416704 HLA-DRA [+3881bp] All: C 103,235 14 C vs. T - - 0.92 (0.87-0.96) 63 (34-79) 2.16e-04
rs34758669 chr6:32396384 HLA-DRA [-11235bp] All: C 103,235 14 A vs. G - - 0.75 (0.64-0.87) 0 (0-33) 2.20e-04
rs17208881 chr6:32379263 BTNL2 [+4358bp] All: C 103,235 14 A vs. G - 0.008 (G) 0.76 (0.66-0.88) 0 (0-29) 2.26e-04
rs3117102 chr6:32350107 C6orf10 [+10423bp] All: C 103,235 14 C vs. T 0.308 (C) 0.25 (C) 1.07 (1.03-1.11) 64 (36-80) 2.27e-04
rs12525707 chr6:32415637 HLA-DRA [+2814bp] All: C 103,235 14 T vs. G 0.192 (T) 0.033 (T) 1.09 (1.04-1.14) 61 (31-78) 2.30e-04
rs80082908 chr6:32416945 HLA-DRA [+4122bp] C - 12 C vs. G - - <1 (-) 0 (-) <0.05
rs28895027 chr6:32414948 HLA-DRA [+2125bp] All: C 103,235 14 C vs. T 0.2 (C) - 1.09 (1.04-1.14) 61 (31-78) 2.31e-04
rs9268500 chr6:32376517 BTNL2 [+1612bp] All: C 102,789 13 T vs. C 0.1 (T) - 0.86 (0.79-0.93) 0 (0-10) 2.38e-04
rs28895077 chr6:32417877 HLA-DRA [+5054bp] All: C 103,235 14 G vs. A 0.192 (G) 0.033 (G) 1.09 (1.04-1.14) 61 (31-78) 2.40e-04
rs12529078 chr6:32415762 HLA-DRA [+2939bp] All: C 103,235 14 G vs. A 0.192 (G) - 1.09 (1.04-1.14) 62 (31-79) 2.44e-04
rs17202577 chr6:32380073 BTNL2 [+5168bp] All: C 103,235 14 C vs. T - - 0.76 (0.66-0.88) 0 (0-28) 2.45e-04
rs28895028 chr6:32415211 HLA-DRA [+2388bp] All: C 103,235 14 A vs. G 0.192 (A) 0.025 (A) 1.09 (1.04-1.14) 61 (31-78) 2.46e-04
rs9268788 chr6:32420866 HLA-DRA [+8043bp] All: C 103,235 14 C vs. T - - 1.08 (1.04-1.12) 0 (0-5) 2.65e-04
rs9268787 chr6:32420864 HLA-DRA [+8041bp] All: C 103,235 14 A vs. G - - 1.08 (1.04-1.12) 0 (0-5) 2.66e-04
rs9268387 chr6:32337367 C6orf10 All: C 103,235 14 T vs. G - - 1.06 (1.03-1.10) 0 (0-55) 2.70e-04
rs28895085 chr6:32418251 HLA-DRA [+5428bp] All: C 103,235 14 C vs. T 0.192 (C) - 1.09 (1.04-1.15) 63 (34-79) 2.73e-04
rs28895049 chr6:32416806 HLA-DRA [+3983bp] All: C 103,235 14 A vs. G - - 0.92 (0.88-0.96) 62 (32-79) 2.75e-04
rs28895091 chr6:32418622 HLA-DRA [+5799bp] All: C 103,235 14 G vs. T 0.192 (G) 0.033 (G) 1.10 (1.04-1.15) 64 (36-80) 2.75e-04
rs28895092 chr6:32418649 HLA-DRA [+5826bp] All: C 103,235 14 A vs. C 0.192 (A) - 1.10 (1.04-1.15) 64 (36-80) 2.75e-04
rs28895093 chr6:32418657 HLA-DRA [+5834bp] All: C 103,235 14 A vs. G 0.192 (A) 0.033 (A) 1.10 (1.04-1.15) 64 (36-80) 2.75e-04
rs34673422 chr6:32332661 C6orf10 All: C 96,015 12 C vs. A 0.008 (C) - 1.41 (1.17-1.69) 16 (0-56) 2.75e-04
rs28895095 chr6:32418848 HLA-DRA [+6025bp] All: C 103,235 14 A vs. G 0.125 (A) - 1.10 (1.04-1.16) 62 (32-79) 2.76e-04
rs28895082 chr6:32418114 HLA-DRA [+5291bp] All: C 103,235 14 C vs. T 0.192 (C) 0.033 (C) 1.09 (1.04-1.15) 63 (34-79) 2.77e-04
rs28895048 chr6:32416785 HLA-DRA [+3962bp] All: C 103,235 14 T vs. C - - 0.92 (0.88-0.96) 62 (32-79) 2.95e-04
rs9268326 chr6:32330153 C6orf10 All: C 103,235 14 C vs. T 0.358 (C) 0.392 (C) 0.94 (0.91-0.97) 0 (0-51) 2.98e-04

Association studies for this region [+]