BTNL2, chr6:32361740-32374905 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2395163 chr6:32387809 BTNL2 [+12904bp] All: C 103,235 14 C vs. T 0.283 (C) 0.1 (C) 0.87 (0.84-0.91) 0 (0-54) 5.00e-12
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs28895072 chr6:32417720 HLA-DRA [+4897bp] All: C 103,235 14 T vs. C 0.158 (T) - 1.09 (1.04-1.15) 60 (28-78) 2.99e-04
rs71565322 chr6:32391527 HLA-DRA [-16092bp] All: C 103,235 14 G vs. A - 0.017 (A) 0.75 (0.65-0.88) 0 (0-32) 2.99e-04
rs28895071 chr6:32417715 HLA-DRA [+4892bp] All: C 103,235 14 A vs. G 0.175 (A) - 1.09 (1.04-1.15) 60 (28-78) 3.01e-04
rs34768004 chr6:32390820 BTNL2 [+15915bp] All: C 103,235 14 G vs. A - - 0.75 (0.65-0.88) 0 (0-32) 3.02e-04
rs2239803 chr6:32411833 HLA-DRA All: C 103,235 14 T vs. C 0.467 (T) 0.35 (C) 0.94 (0.91-0.97) 0 (0-6) 3.06e-04
rs28895029 chr6:32415982 HLA-DRA [+3159bp] All: C 103,235 14 C vs. T 0.192 (C) 0.025 (C) 1.09 (1.04-1.14) 62 (32-79) 3.09e-04
rs28895073 chr6:32417723 HLA-DRA [+4900bp] All: C 103,235 14 G vs. A 0.15 (G) - 1.09 (1.04-1.15) 60 (28-78) 3.14e-04
rs13209045 chr6:32416052 HLA-DRA [+3229bp] All: C 103,235 14 A vs. G - - 0.92 (0.88-0.96) 62 (32-79) 3.22e-04
rs9268730 chr6:32417079 HLA-DRA [+4256bp] All: C 103,235 14 A vs. G 0.183 (A) 0.033 (A) 1.09 (1.04-1.14) 63 (34-79) 3.23e-04
rs1967688 chr6:32340068 C6orf10 [+384bp] C - 12 T vs. C - - <1 (-) 5 (-) <0.05
rs9268283 chr6:32315173 C6orf10 All: C 103,235 14 C vs. T 0.4 (C) 0.392 (C) 0.94 (0.91-0.97) 2 (0-56) 3.26e-04
rs72850968 chr6:32416985 HLA-DRA [+4162bp] All: C 103,235 14 A vs. G 0.183 (A) - 1.09 (1.04-1.14) 62 (32-79) 3.28e-04
rs13196329 chr6:32325371 C6orf10 All: C 96,015 12 C vs. A 0.008 (C) - 1.35 (1.15-1.59) 21 (0-59) 3.30e-04
rs28895050 chr6:32416906 HLA-DRA [+4083bp] All: C 103,235 14 G vs. A 0.117 (G) - 1.09 (1.04-1.15) 62 (33-79) 3.44e-04
rs28895076 chr6:32417845 HLA-DRA [+5022bp] All: C 103,235 14 C vs. T 0.192 (C) - 1.09 (1.04-1.14) 62 (32-79) 3.44e-04
rs28895074 chr6:32417766 HLA-DRA [+4943bp] All: C 103,235 14 C vs. T 0.192 (C) 0.033 (C) 1.09 (1.04-1.14) 62 (32-79) 3.46e-04
rs9268333 chr6:32330651 C6orf10 All: C 103,235 14 T vs. C 0.392 (T) 0.392 (T) 0.94 (0.91-0.97) 0 (0-54) 3.48e-04
rs9268343 chr6:32331824 C6orf10 All: C 103,235 14 G vs. A 0.392 (G) 0.4 (G) 0.94 (0.91-0.97) 0 (0-54) 3.48e-04
rs9268344 chr6:32331837 C6orf10 All: C 103,235 14 T vs. C 0.392 (T) 0.392 (T) 0.94 (0.91-0.97) 0 (0-54) 3.48e-04
rs9268345 chr6:32331841 C6orf10 All: C 103,235 14 A vs. G 0.392 (A) 0.392 (A) 0.94 (0.91-0.97) 0 (0-54) 3.48e-04
rs2050188 chr6:32339897 C6orf10 [+213bp] All: C 103,235 14 C vs. T 0.317 (C) 0.433 (C) 1.07 (1.03-1.10) 64 (36-80) 3.50e-04
rs28895080 chr6:32417932 HLA-DRA [+5109bp] All: C 103,235 14 T vs. C 0.192 (T) 0.033 (T) 1.09 (1.04-1.14) 62 (32-79) 3.50e-04
rs28895079 chr6:32417901 HLA-DRA [+5078bp] All: C 103,235 14 T vs. C 0.192 (T) 0.017 (T) 1.09 (1.04-1.14) 62 (32-79) 3.51e-04
rs3129946 chr6:32346772 C6orf10 [+7088bp] All: C 103,235 14 A vs. G 0.308 (A) 0.267 (A) 1.07 (1.03-1.11) 64 (37-80) 3.53e-04
rs4959093 chr6:32313097 C6orf10 All: C 103,235 14 C vs. T 0.392 (C) 0.392 (C) 0.94 (0.91-0.97) 3 (0-56) 3.57e-04
rs4959094 chr6:32313136 C6orf10 All: C 103,235 14 T vs. C 0.383 (T) 0.392 (T) 0.94 (0.91-0.97) 3 (0-56) 3.57e-04
rs28895089 chr6:32418434 HLA-DRA [+5611bp] All: C 103,235 14 T vs. C 0.192 (T) 0.033 (T) 1.09 (1.04-1.14) 62 (33-79) 3.63e-04
rs28895088 chr6:32418396 HLA-DRA [+5573bp] All: C 103,235 14 A vs. C 0.192 (A) 0.033 (A) 1.09 (1.04-1.14) 62 (33-79) 3.65e-04
rs12529093 chr6:32415858 HLA-DRA [+3035bp] All: C 103,235 14 G vs. A 0.192 (G) 0.042 (G) 1.09 (1.04-1.14) 60 (28-78) 3.66e-04
rs6912095 chr6:32331429 C6orf10 All: C 103,235 14 A vs. C 0.383 (A) 0.383 (A) 0.94 (0.91-0.97) 0 (0-53) 3.66e-04
rs9268271 chr6:32312883 C6orf10 All: C 103,235 14 T vs. C 0.392 (T) 0.392 (T) 0.94 (0.91-0.97) 2 (0-56) 3.66e-04
rs1555116 chr6:32312740 C6orf10 All: C 103,235 14 A vs. C 0.383 (A) 0.392 (A) 0.94 (0.91-0.97) 0 (0-54) 3.69e-04
rs35633069 chr6:32386650 BTNL2 [+11745bp] All: C 103,235 14 C vs. T - - 0.76 (0.65-0.88) 0 (0-31) 3.69e-04
rs28895087 chr6:32418330 HLA-DRA [+5507bp] All: C 103,235 14 A vs. C 0.192 (A) 0.033 (A) 1.09 (1.04-1.14) 62 (33-79) 3.74e-04
rs4959026 chr6:32313461 C6orf10 All: C 103,235 14 T vs. G 0.375 (T) 0.392 (T) 0.94 (0.91-0.97) 0 (0-54) 3.79e-04
rs9268285 chr6:32315557 C6orf10 All: C 103,235 14 C vs. T 0.392 (C) 0.392 (C) 0.94 (0.91-0.97) 0 (0-54) 3.83e-04
rs28895075 chr6:32417825 HLA-DRA [+5002bp] All: C 103,235 14 T vs. G 0.167 (T) - 1.09 (1.04-1.14) 62 (33-79) 3.86e-04
rs4576282 chr6:32312796 C6orf10 All: C 103,235 14 G vs. A 0.392 (G) 0.392 (G) 0.94 (0.91-0.97) 0 (0-54) 3.86e-04
rs9268368 chr6:32333955 C6orf10 All: C 103,235 14 C vs. T 0.392 (C) 0.392 (C) 0.94 (0.91-0.97) 0 (0-53) 3.88e-04
rs9268307 chr6:32326531 C6orf10 All: C 103,235 14 T vs. C - - 1.06 (1.03-1.10) 0 (0-54) 3.89e-04
rs9268363 chr6:32333410 C6orf10 All: C 103,235 14 C vs. A 0.375 (C) 0.4 (C) 0.94 (0.91-0.97) 0 (0-53) 3.90e-04
rs4959096 chr6:32314676 C6orf10 All: C 103,235 14 A vs. G 0.417 (A) 0.392 (A) 0.94 (0.91-0.97) 0 (0-54) 3.92e-04
rs9268386 chr6:32337234 C6orf10 All: C 103,235 14 G vs. A - - 1.06 (1.03-1.10) 0 (0-54) 3.93e-04
rs9268384 chr6:32336586 C6orf10 All: C 103,235 14 G vs. A 0.392 (G) 0.375 (G) 0.94 (0.91-0.97) 0 (0-54) 3.94e-04
rs2143463 chr6:32318729 C6orf10 All: C 103,235 14 G vs. A 0.383 (G) 0.392 (G) 0.94 (0.91-0.97) 0 (0-53) 3.99e-04
rs28895115 chr6:32420133 HLA-DRA [+7310bp] All: C 103,235 14 A vs. C 0.192 (A) - 1.10 (1.04-1.16) 64 (37-80) 3.99e-04
rs28895142 chr6:32421709 HLA-DRA [+8886bp] All: C 103,235 14 C vs. T 0.167 (C) 0.033 (C) 1.10 (1.04-1.16) 64 (36-80) 4.06e-04
rs28895100 chr6:32419415 HLA-DRA [+6592bp] All: C 103,235 14 G vs. A 0.183 (G) - 1.09 (1.04-1.14) 63 (34-79) 4.16e-04
rs28895047 chr6:32416666 HLA-DRA [+3843bp] All: C 103,235 14 C vs. T - - 0.92 (0.87-0.96) 63 (35-79) 4.23e-04
rs2076542 chr6:32317127 C6orf10 All: C 103,235 14 A vs. G 0.392 (A) 0.392 (A) 0.94 (0.91-0.97) 0 (0-54) 4.36e-04

Association studies for this region [+]