BTNL2, chr6:32361740-32374905 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2395163 chr6:32387809 BTNL2 [+12904bp] All: C 103,235 14 C vs. T 0.283 (C) 0.1 (C) 0.87 (0.84-0.91) 0 (0-54) 5.00e-12
Meta_image?name=rs2395163

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs28895135 chr6:32421442 HLA-DRA [+8619bp] All: C 103,235 14 G vs. T 0.175 (G) - 1.09 (1.04-1.15) 64 (36-80) 7.16e-04
rs13212453 chr6:32422430 HLA-DRA [+9607bp] All: C 103,235 14 G vs. A 0.192 (G) 0.025 (G) 1.10 (1.04-1.16) 65 (38-80) 7.19e-04
rs28895156 chr6:32422419 HLA-DRA [+9596bp] All: C 103,235 14 A vs. G 0.192 (A) 0.033 (A) 1.10 (1.04-1.16) 65 (38-80) 7.19e-04
rs9378202 chr6:32341208 C6orf10 [+1524bp] All: C 103,235 14 C vs. T 0.192 (C) 0.108 (C) 1.08 (1.03-1.13) 41 (0-69) 7.25e-04
rs3117098 chr6:32358513 BTNL2 [-3227bp] All: C 103,235 14 G vs. A 0.3 (G) - 1.06 (1.03-1.10) 66 (41-81) 7.26e-04
rs3129955 chr6:32365840 BTNL2 All: C 103,235 14 T vs. C 0.308 (T) 0.242 (T) 1.06 (1.03-1.10) 66 (40-81) 7.30e-04
rs28895132 chr6:32421271 HLA-DRA [+8448bp] All: C 103,235 14 A vs. G 0.183 (A) 0.033 (A) 1.09 (1.04-1.15) 64 (36-80) 7.31e-04
rs28895137 chr6:32421564 HLA-DRA [+8741bp] All: C 103,235 14 A vs. G 0.183 (A) - 1.09 (1.04-1.15) 64 (35-80) 7.31e-04
rs28895131 chr6:32421190 HLA-DRA [+8367bp] All: C 103,235 14 C vs. T 0.183 (C) 0.033 (C) 1.09 (1.04-1.15) 64 (36-80) 7.33e-04
rs7382085 chr6:32414420 HLA-DRA [+1597bp] All: C 103,235 14 G vs. A 0.225 (G) 0.267 (G) 1.07 (1.03-1.11) 48 (4-72) 7.37e-04
rs17208902 chr6:32379547 BTNL2 [+4642bp] All: C 103,235 14 T vs. C 0.217 (T) 0.183 (T) 1.07 (1.03-1.12) 44 (0-70) 7.39e-04
rs28895136 chr6:32421504 HLA-DRA [+8681bp] All: C 103,235 14 C vs. T 0.183 (C) - 1.09 (1.04-1.15) 64 (36-80) 7.42e-04
rs3129957 chr6:32368593 BTNL2 All: C 103,235 14 G vs. A - - 0.94 (0.91-0.98) 65 (38-80) 7.52e-04
rs9268284 chr6:32315216 C6orf10 All: C 103,235 14 A vs. G 0.392 (A) 0.392 (A) 0.95 (0.91-0.98) 4 (0-57) 7.63e-04
rs28895066 chr6:32417522 HLA-DRA [+4699bp] All: C 103,235 14 T vs. C - - 0.92 (0.87-0.97) 63 (33-79) 7.78e-04
rs7382354 chr6:32414639 HLA-DRA [+1816bp] All: C 103,235 14 A vs. G - - 0.94 (0.90-0.97) 48 (4-72) 7.93e-04
rs3129954 chr6:32365580 BTNL2 All: C 103,235 14 A vs. G 0.317 (A) 0.242 (A) 1.06 (1.02-1.10) 66 (41-81) 8.00e-04
rs28895170 chr6:32422934 HLA-DRA [+10111bp] All: C 103,235 14 A vs. G 0.192 (A) 0.033 (A) 1.09 (1.04-1.15) 64 (37-80) 8.02e-04
rs28895155 chr6:32422373 HLA-DRA [+9550bp] All: C 103,235 14 A vs. G 0.192 (A) - 1.09 (1.04-1.15) 65 (39-80) 8.04e-04
rs28895169 chr6:32422920 HLA-DRA [+10097bp] All: C 103,235 14 G vs. A 0.192 (G) 0.033 (G) 1.09 (1.04-1.15) 64 (37-80) 8.05e-04
rs3763305 chr6:32369488 BTNL2 All: C 99,956 12 A vs. G 0.108 (A) 0.042 (A) 0.88 (0.81-0.95) 0 (0-28) 8.11e-04
rs9268778 chr6:32420372 HLA-DRA [+7549bp] C - 12 A vs. T 0.45 (T) 0.458 (A) >1 (-) 0 (-) <0.05
rs13215827 chr6:32422566 HLA-DRA [+9743bp] All: C 103,235 14 T vs. C 0.192 (T) - 1.09 (1.04-1.15) 65 (38-80) 8.39e-04
rs28895171 chr6:32423021 HLA-DRA [+10198bp] All: C 103,235 14 A vs. G 0.192 (A) 0.033 (A) 1.09 (1.04-1.15) 64 (37-80) 8.64e-04
rs28895145 chr6:32421861 HLA-DRA [+9038bp] All: C 103,235 14 C vs. T 0.192 (C) - 1.09 (1.04-1.15) 64 (36-80) 8.76e-04
rs28895157 chr6:32422677 HLA-DRA [+9854bp] All: C 103,235 14 G vs. T 0.192 (G) 0.033 (G) 1.09 (1.04-1.15) 63 (35-79) 8.89e-04
rs28895144 chr6:32421794 HLA-DRA [+8971bp] All: C 103,235 14 G vs. A 0.192 (G) 0.033 (G) 1.09 (1.04-1.15) 64 (35-80) 9.10e-04
rs28895046 chr6:32416645 HLA-DRA [+3822bp] All: C 103,235 14 T vs. G 0.183 (T) - 1.09 (1.04-1.14) 64 (35-79) 9.35e-04
rs28895168 chr6:32422867 HLA-DRA [+10044bp] All: C 103,235 14 G vs. A 0.192 (G) - 1.09 (1.04-1.15) 64 (36-80) 9.56e-04
rs2076530 chr6:32363816 BTNL2 C - 12 T vs. C 0.492 (T) 0.367 (C) >1 (-) 53 (-) <0.05
rs3129888 chr6:32411726 HLA-DRA All: C 103,235 14 G vs. A 0.225 (G) 0.05 (G) 1.07 (1.03-1.11) 47 (1-72) 0.001
rs3129952 chr6:32359763 BTNL2 [-1977bp] C - 12 C vs. G 0.308 (G) 0.258 (G) <1 (-) 70 (-) <0.05
rs4424066 chr6:32354428 BTNL2 [-7312bp] C - 12 A vs. G 0.492 (A) 0.333 (G) >1 (-) 54 (-) <0.05
rs2239802 chr6:32411846 HLA-DRA C - 12 C vs. G 0.225 (C) 0.167 (C) >1 (-) 57 (-) <0.05
rs9268810 chr6:32424296 HLA-DRA [+11473bp] C - 12 T vs. C 0.45 (T) 0.458 (C) <1 (-) 0 (-) <0.05
rs2213581 chr6:32388546 BTNL2 [+13641bp] All: C 103,235 14 T vs. C 0.267 (T) 0.0 (T) 1.06 (1.02-1.11) 35 (0-66) 0.002
rs9268472 chr6:32355605 BTNL2 [-6135bp] C - 12 A vs. G 0.492 (G) 0.333 (A) <1 (-) 54 (-) <0.05
rs28895118 chr6:32420701 HLA-DRA [+7878bp] All: C 103,235 14 A vs. G 0.167 (A) - 1.09 (1.03-1.15) 65 (37-80) 0.002
rs3817964 chr6:32367997 BTNL2 C - 11 A vs. T 0.108 (A) 0.067 (A) <1 (-) 0 (-) <0.05
rs9268814 chr6:32424616 HLA-DRA [+11793bp] C - 12 C vs. G 0.458 (G) 0.458 (C) >1 (-) 0 (-) <0.05
rs3117139 chr6:32364667 BTNL2 C - 12 A vs. G - - >1 (-) 57 (-) <0.05
rs28895054 chr6:32417167 HLA-DRA [+4344bp] All: C 103,235 14 A vs. G 0.142 (A) 0.017 (A) 1.09 (1.03-1.15) 59 (25-77) 0.002
rs9268804 chr6:32423355 HLA-DRA [+10532bp] C - 12 C vs. G 0.392 (G) 0.458 (C) >1 (-) 0 (-) <0.05
rs9268580 chr6:32396905 HLA-DRA [-10714bp] C - 12 C vs. G 0.4 (C) 0.45 (C) <1 (-) 0 (-) <0.05
rs9268807 chr6:32423915 HLA-DRA [+11092bp] C - 12 C vs. G 0.2 (C) 0.2 (C) >1 (-) 46 (-) <0.05
rs3135387 chr6:32415109 HLA-DRA [+2286bp] C - 12 T vs. G 0.225 (T) 0.158 (T) >1 (-) 53 (-) <0.05
rs3129934 chr6:32336187 C6orf10 C - 12 T vs. C 0.2 (T) 0.025 (T) >1 (-) 33 (-) <0.05
rs6457589 chr6:32419961 HLA-DRA [+7138bp] C - 12 T vs. G 0.35 (T) 0.442 (T) >1 (-) 15 (-) <0.05
rs3129938 chr6:32336495 C6orf10 C - 12 A vs. T 0.208 (T) 0.025 (T) <1 (-) 33 (-) <0.05
rs2073044 chr6:32338986 C6orf10 C - 12 T vs. C 0.317 (T) 0.225 (T) <1 (-) 10 (-) <0.05

Association studies for this region [+]