BTNL2, chr6:32361740-32374905 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2395163 chr6:32387809 BTNL2 [+12904bp] All: C 103,235 14 C vs. T 0.283 (C) 0.1 (C) 0.87 (0.84-0.91) 0 (0-54) 5.00e-12
Meta_image?name=rs2395163

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs3132963 chr6:32320153 C6orf10 C - 12 A vs. G 0.208 (G) 0.05 (G) <1 (-) 33 (-) <0.05
rs4412247 chr6:32386471 BTNL2 [+11566bp] C - 12 A vs. G - - >1 (-) 54 (-) <0.05
rs9268645 chr6:32408527 HLA-DRA C - 12 C vs. G 0.4 (G) 0.475 (C) >1 (-) 0 (-) <0.05
rs3117119 chr6:32318610 C6orf10 C - 12 A vs. G 0.2 (G) 0.017 (G) <1 (-) 33 (-) <0.05
rs28895187 chr6:32424380 HLA-DRA [+11557bp] All: C 100,472 13 A vs. G 0.192 (A) 0.033 (A) 1.08 (1.03-1.14) 63 (32-79) 0.003
rs3129898 chr6:32422125 HLA-DRA [+9302bp] C - 12 A vs. G 0.2 (G) - <1 (-) 46 (-) <0.05
rs3117115 chr6:32324055 C6orf10 C - 12 A vs. C 0.192 (A) - >1 (-) 50 (-) <0.05
rs3117125 chr6:32316016 C6orf10 C - 12 T vs. G 0.2 (T) 0.025 (T) >1 (-) 32 (-) <0.05
rs114539073 chr6:32312274 C6orf10 All: C 93,766 12 A vs. G 0.008 (A) - 0.78 (0.66-0.92) 0 (0-33) 0.003
rs3117116 chr6:32367017 BTNL2 C - 12 A vs. G 0.192 (G) 0.125 (G) <1 (-) 58 (-) <0.05
rs3129895 chr6:32421227 HLA-DRA [+8404bp] C - 12 A vs. G 0.2 (A) 0.175 (A) >1 (-) 47 (-) <0.05
rs3129866 chr6:32404065 HLA-DRA [-3554bp] C - 10 C vs. G 0.333 (G) 0.317 (G) <1 (-) 51 (-) <0.05
rs9268321 chr6:32329598 C6orf10 C - 12 A vs. G 0.192 (A) 0.0 (A) >1 (-) 53 (-) <0.05
rs28895172 chr6:32423058 HLA-DRA [+10235bp] All: C 100,472 13 A vs. G - - 0.93 (0.88-0.97) 62 (31-79) 0.003
rs3135384 chr6:32419959 HLA-DRA [+7136bp] C - 12 A vs. G 0.208 (A) 0.117 (A) >1 (-) 48 (-) <0.05
rs9268653 chr6:32409058 HLA-DRA C - 12 T vs. C - - >1 (-) 57 (-) <0.05
rs28732215 chr6:32408932 HLA-DRA All: C 103,235 14 G vs. A - - 0.89 (0.82-0.96) 45 (0-71) 0.003
rs3117117 chr6:32321272 C6orf10 C - 12 A vs. C 0.2 (C) - <1 (-) 52 (-) <0.05
rs28732206 chr6:32383335 BTNL2 [+8430bp] All: C 103,235 14 C vs. G 0.042 (C) - 1.13 (1.04-1.23) 43 (0-69) 0.004
rs9268588 chr6:32397794 HLA-DRA [-9825bp] C - 12 C vs. G 0.4 (G) 0.475 (C) >1 (-) 0 (-) <0.05
rs7756262 chr6:32398675 HLA-DRA [-8944bp] C - 12 A vs. T 0.4 (A) 0.475 (T) <1 (-) 0 (-) <0.05
rs9268615 chr6:32402889 HLA-DRA [-4730bp] C - 12 A vs. G 0.408 (A) 0.475 (G) <1 (-) 0 (-) <0.05
rs2187818 chr6:32395568 HLA-DRA [-12051bp] C - 12 T vs. G 0.4 (T) 0.45 (T) <1 (-) 0 (-) <0.05
rs3129889 chr6:32413545 HLA-DRA [+722bp] C - 12 A vs. G 0.217 (G) 0.0 (G) <1 (-) 53 (-) <0.05
rs3135388 chr6:32413051 HLA-DRA [+228bp] C - 12 A vs. G 0.2 (A) 0.0 (A) >1 (-) 53 (-) <0.05
rs3135352 chr6:32392906 HLA-DRA [-14713bp] C - 12 A vs. C 0.2 (C) - <1 (-) 55 (-) <0.05
rs3135350 chr6:32392981 HLA-DRA [-14638bp] C - 12 T vs. C 0.208 (C) 0.0 (C) <1 (-) 55 (-) <0.05
rs28732203 chr6:32362447 BTNL2 All: C 103,235 14 T vs. C 0.042 (T) - 1.13 (1.04-1.22) 46 (0-71) 0.005
rs6926611 chr6:32386433 BTNL2 [+11528bp] C - 12 A vs. G - - >1 (-) 0 (-) <0.05
rs9501620 chr6:32383027 BTNL2 [+8122bp] C - 12 A vs. G - - >1 (-) 0 (-) <0.05
rs4577793 chr6:32422722 HLA-DRA [+9899bp] C - 12 T vs. C 0.358 (T) 0.425 (T) >1 (-) 16 (-) <0.05
rs3117100 chr6:32352220 BTNL2 [-9520bp] C - 12 A vs. G - - >1 (-) 57 (-) <0.05
rs3135377 chr6:32385399 BTNL2 [+10494bp] C - 12 A vs. G 0.267 (A) 0.008 (A) >1 (-) 45 (-) <0.05
rs2395165 chr6:32388144 BTNL2 [+13239bp] C - 12 T vs. C 0.267 (C) 0.008 (C) <1 (-) 44 (-) <0.05
rs3135391 chr6:32410987 HLA-DRA C - 12 A vs. G 0.2 (A) 0.0 (A) >1 (-) 56 (-) <0.05
rs17208923 chr6:32380232 BTNL2 [+5327bp] C - 12 T vs. C 0.008 (T) - >1 (-) 17 (-) <0.05
rs62404580 chr6:32377860 BTNL2 [+2955bp] C - 12 T vs. C - - >1 (-) 59 (-) <0.05
rs1265758 chr6:32323529 C6orf10 C - 12 A vs. G 0.45 (A) 0.492 (A) >1 (-) 0 (-) <0.05
rs13196388 chr6:32355253 BTNL2 [-6487bp] C - 12 C vs. G - - >1 (-) 0 (-) <0.05
rs968155 chr6:32380715 BTNL2 [+5810bp] C - 12 T vs. C 0.45 (C) 0.317 (C) <1 (-) 58 (-) <0.05
rs7775978 chr6:32328895 C6orf10 C - 12 A vs. G - - <1 (-) 0 (-) <0.05
rs3763323 chr6:32406843 HLA-DRA [-776bp] C - 12 T vs. C - - <1 (-) 58 (-) <0.05
rs3129868 chr6:32404377 HLA-DRA [-3242bp] C - 12 A vs. C 0.2 (A) 0.133 (A) >1 (-) 59 (-) <0.05
rs9268635 chr6:32406579 HLA-DRA [-1040bp] C - 12 T vs. C 0.2 (T) 0.0 (T) >1 (-) 58 (-) <0.05
rs9461744 chr6:32388317 BTNL2 [+13412bp] C - 12 A vs. G 0.008 (G) 0.108 (G) <1 (-) 0 (-) <0.05
rs4959028 chr6:32383138 BTNL2 [+8233bp] C - 12 A vs. G 0.025 (G) 0.175 (G) <1 (-) 0 (-) <0.05
rs9268671 chr6:32414290 HLA-DRA [+1467bp] C - 12 A vs. G 0.325 (A) 0.25 (A) >1 (-) 36 (-) <0.05
rs3129860 chr6:32401079 HLA-DRA [-6540bp] C - 12 A vs. G 0.2 (A) 0.142 (A) >1 (-) 60 (-) <0.05
rs2395150 chr6:32326045 C6orf10 C - 12 A vs. G 0.45 (G) 0.492 (G) <1 (-) 0 (-) <0.05
rs9268783 chr6:32420715 HLA-DRA [+7892bp] C - 12 T vs. C 0.375 (T) 0.425 (T) >1 (-) 28 (-) <0.05

Association studies for this region [+]