HCG27, chr6:31165537-31171745 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6930643 chr6:31174035 HCG27 [+2290bp] All: C 103,235 14 C vs. T - - 0.92 (0.89-0.95) 19 (0-56) 1.23e-06
Meta_image?name=rs6930643

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9263847 chr6:31156086 POU5F1 [+7578bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs116506047 chr6:31220440 HLA-C [-16086bp] C - 6 A vs. G 0.033 (G) - <1 (-) 0 (-) >0.05
rs3208498 chr6:31154421 POU5F1 [+5913bp] C - 12 T vs. C - - >1 (-) 26 (-) >0.05
rs3094190 chr6:31140073 POU5F1 C - 12 A vs. G 0.467 (G) 0.442 (G) <1 (-) 9 (-) >0.05
rs3132502 chr6:31183509 HCG27 [+11764bp] C - 12 A vs. G 0.242 (A) 0.383 (A) <1 (-) 5 (-) >0.05
rs12526142 chr6:31160116 HCG27 [-5421bp] C - 12 T vs. C 0.025 (T) 0.033 (T) >1 (-) 0 (-) >0.05
rs3132519 chr6:31140088 POU5F1 C - 12 T vs. C 0.483 (C) 0.433 (T) >1 (-) 9 (-) >0.05
rs3132518 chr6:31140169 POU5F1 C - 12 C vs. G 0.483 (C) 0.408 (C) >1 (-) 11 (-) >0.05
rs3130949 chr6:31191867 HCG27 [+20122bp] C - 12 T vs. C - 0.125 (T) <1 (-) 0 (-) >0.05
rs1061118 chr6:31132414 TCF19 C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs55938644 chr6:31161856 HCG27 [-3681bp] C - 12 T vs. C 0.075 (C) - <1 (-) 27 (-) >0.05
rs2394882 chr6:31132649 TCF19 C - 12 A vs. C 0.35 (A) 0.425 (A) >1 (-) 0 (-) >0.05
rs2394944 chr6:31220450 HLA-C [-16076bp] C - 10 T vs. C 0.225 (T) 0.175 (T) <1 (-) 0 (-) >0.05
rs3130467 chr6:31187075 HCG27 [+15330bp] C - 12 T vs. C 0.258 (T) 0.35 (T) <1 (-) 0 (-) >0.05
rs6914710 chr6:31175284 HCG27 [+3539bp] C - 12 A vs. G - - <1 (-) 23 (-) >0.05
rs6914706 chr6:31175275 HCG27 [+3530bp] C - 12 A vs. G - - <1 (-) 23 (-) >0.05
rs6914393 chr6:31175276 HCG27 [+3531bp] C - 12 T vs. C - - <1 (-) 23 (-) >0.05
rs2394941 chr6:31220273 HLA-C [-16253bp] C - 10 A vs. T 0.208 (A) 0.167 (A) <1 (-) 0 (-) >0.05
rs28617578 chr6:31159522 HCG27 [-6015bp] C - 12 T vs. C - - >1 (-) 24 (-) >0.05
rs9295964 chr6:31169538 HCG27 C - 12 C vs. G - - >1 (-) 0 (-) >0.05
rs17191181 chr6:31171876 HCG27 [+131bp] C - 12 T vs. C 0.183 (T) 0.242 (T) <1 (-) 25 (-) >0.05
rs9501508 chr6:31163094 HCG27 [-2443bp] C - 12 T vs. C - - >1 (-) 25 (-) >0.05
rs9461657 chr6:31162648 HCG27 [-2889bp] C - 12 A vs. C 0.075 (A) 0.033 (A) >1 (-) 25 (-) >0.05
rs11970124 chr6:31153916 POU5F1 [+5408bp] C - 12 A vs. G 0.033 (A) 0.033 (A) >1 (-) 21 (-) >0.05
rs3130953 chr6:31177094 HCG27 [+5349bp] C - 12 A vs. G 0.267 (A) 0.392 (A) <1 (-) 0 (-) >0.05
rs3134770 chr6:31204986 HLA-C [-31540bp] C - 12 T vs. C - - >1 (-) 42 (-) >0.05
rs885948 chr6:31140532 POU5F1 C - 12 A vs. G 0.475 (G) 0.45 (G) >1 (-) 26 (-) >0.05
rs9468880 chr6:31150858 POU5F1 [+2350bp] C - 12 A vs. G - 0.017 (A) >1 (-) 19 (-) >0.05
rs12527342 chr6:31158505 HCG27 [-7032bp] C - 12 T vs. C 0.067 (C) 0.033 (C) <1 (-) 22 (-) >0.05
rs113563747 chr6:31210259 HLA-C [-26267bp] C - 4 A vs. G - - >1 (-) 25 (-) >0.05
rs60107636 chr6:31156698 POU5F1 [+8190bp] C - 12 T vs. C - - >1 (-) 22 (-) >0.05
rs9461652 chr6:31155187 POU5F1 [+6679bp] C - 12 A vs. G 0.075 (A) 0.033 (A) >1 (-) 22 (-) >0.05
rs11961945 chr6:31151248 POU5F1 [+2740bp] C - 12 A vs. G - - <1 (-) 40 (-) >0.05
rs28749548 chr6:31150914 POU5F1 [+2406bp] C - 12 A vs. T - - <1 (-) 40 (-) >0.05
rs60851386 chr6:31161404 HCG27 [-4133bp] C - 12 T vs. C 0.075 (T) 0.033 (T) >1 (-) 23 (-) >0.05
rs9295959 chr6:31159041 HCG27 [-6496bp] C - 12 A vs. G - - >1 (-) 22 (-) >0.05
rs2894181 chr6:31174527 HCG27 [+2782bp] C - 12 A vs. G 0.492 (G) 0.367 (G) >1 (-) 0 (-) >0.05
rs17197375 chr6:31154040 POU5F1 [+5532bp] C - 12 T vs. C 0.05 (T) 0.033 (T) >1 (-) 21 (-) >0.05
rs3132505 chr6:31177503 HCG27 [+5758bp] C - 12 T vs. G 0.233 (T) 0.167 (T) <1 (-) 0 (-) >0.05
rs9468881 chr6:31150870 POU5F1 [+2362bp] C - 12 T vs. C - - >1 (-) 21 (-) >0.05
rs4711258 chr6:31150383 POU5F1 [+1875bp] C - 12 A vs. G 0.067 (A) - >1 (-) 21 (-) >0.05
rs9468887 chr6:31151690 POU5F1 [+3182bp] C - 12 C vs. G - - <1 (-) 21 (-) >0.05
rs4713445 chr6:31161000 HCG27 [-4537bp] C - 12 A vs. G - - >1 (-) 22 (-) >0.05
rs9461653 chr6:31160553 HCG27 [-4984bp] C - 12 A vs. G 0.075 (G) 0.033 (G) <1 (-) 22 (-) >0.05
rs12529498 chr6:31160211 HCG27 [-5326bp] C - 12 A vs. G - - <1 (-) 22 (-) >0.05
rs28397299 chr6:31207704 HLA-C [-28822bp] C - 12 A vs. G 0.158 (A) 0.233 (A) <1 (-) 27 (-) >0.05
rs2394890 chr6:31205229 HLA-C [-31297bp] C - 12 A vs. G 0.4 (A) 0.5 (A) <1 (-) 0 (-) >0.05
rs6914030 chr6:31175096 HCG27 [+3351bp] C - 12 T vs. C - - <1 (-) 33 (-) >0.05
rs3887153 chr6:31176461 HCG27 [+4716bp] C - 12 T vs. C 0.175 (T) 0.242 (T) <1 (-) 27 (-) >0.05
rs17191237 chr6:31176160 HCG27 [+4415bp] C - 12 A vs. T 0.175 (A) 0.242 (A) <1 (-) 27 (-) >0.05

Association studies for this region [+]