HCG27, chr6:31165537-31171745 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6930643 chr6:31174035 HCG27 [+2290bp] All: C 103,235 14 C vs. T - - 0.92 (0.89-0.95) 19 (0-56) 1.23e-06
Meta_image?name=rs6930643

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6457350 chr6:31204109 HCG27 [+32364bp] C - 12 T vs. C 0.175 (C) 0.242 (C) >1 (-) 27 (-) >0.05
rs28397297 chr6:31206948 HLA-C [-29578bp] C - 12 T vs. C 0.175 (T) 0.233 (T) <1 (-) 27 (-) >0.05
rs9501070 chr6:31164224 HCG27 [-1313bp] C - 12 C vs. G 0.075 (G) 0.025 (G) <1 (-) 24 (-) >0.05
rs3868081 chr6:31206138 HLA-C [-30388bp] C - 12 C vs. G 0.175 (C) 0.233 (C) <1 (-) 27 (-) >0.05
rs3134762 chr6:31210866 HLA-C [-25660bp] C - 11 T vs. C 0.225 (C) 0.175 (C) >1 (-) 0 (-) >0.05
rs3869117 chr6:31205923 HLA-C [-30603bp] C - 12 C vs. G 0.175 (G) 0.233 (G) >1 (-) 27 (-) >0.05
rs28397294 chr6:31205043 HLA-C [-31483bp] C - 12 A vs. T 0.175 (T) 0.233 (T) >1 (-) 27 (-) >0.05
rs7745906 chr6:31204008 HCG27 [+32263bp] C - 12 A vs. G 0.175 (A) 0.233 (A) <1 (-) 27 (-) >0.05
rs28397300 chr6:31209301 HLA-C [-27225bp] C - 12 T vs. C - - >1 (-) 26 (-) >0.05
rs6908511 chr6:31204432 HLA-C [-32094bp] C - 12 T vs. C - - <1 (-) 23 (-) >0.05
rs3130511 chr6:31176948 HCG27 [+5203bp] C - 12 T vs. C 0.258 (T) 0.358 (T) <1 (-) 5 (-) >0.05
rs3130685 chr6:31206206 HLA-C [-30320bp] C - 12 T vs. C 0.433 (T) 0.483 (C) <1 (-) 0 (-) >0.05
rs9501505 chr6:31152734 POU5F1 [+4226bp] C - 12 A vs. G - - <1 (-) 21 (-) >0.05
rs6457349 chr6:31203886 HCG27 [+32141bp] C - 12 A vs. T 0.175 (T) 0.225 (T) >1 (-) 27 (-) >0.05
rs3134785 chr6:31179193 HCG27 [+7448bp] C - 12 A vs. G 0.233 (A) 0.175 (A) <1 (-) 0 (-) >0.05
rs1265067 chr6:31116142 CCHCR1 C - 12 A vs. G 0.3 (A) 0.067 (A) <1 (-) 0 (-) >0.05
rs78429324 chr6:31166239 HCG27 C - 12 T vs. C 0.05 (T) 0.025 (T) >1 (-) 24 (-) >0.05
rs1265114 chr6:31117188 CCHCR1 C - 12 T vs. C 0.292 (T) 0.075 (T) <1 (-) 0 (-) >0.05
rs1265112 chr6:31118019 CCHCR1 C - 12 T vs. C 0.292 (C) 0.075 (C) >1 (-) 0 (-) >0.05
rs3132506 chr6:31176226 HCG27 [+4481bp] C - 12 T vs. C 0.225 (C) 0.175 (C) >1 (-) 0 (-) >0.05
rs3134783 chr6:31197263 HCG27 [+25518bp] C - 12 A vs. G 0.25 (A) 0.367 (A) <1 (-) 0 (-) >0.05
rs74372121 chr6:31164116 HCG27 [-1421bp] C - 4 C vs. G - - <1 (-) 0 (-) >0.05
rs3132532 chr6:31201202 HCG27 [+29457bp] C - 12 A vs. G - - >1 (-) 48 (-) >0.05
rs9295961 chr6:31167498 HCG27 C - 12 T vs. C 0.075 (C) 0.033 (C) <1 (-) 23 (-) >0.05
rs1265111 chr6:31119380 CCHCR1 C - 12 A vs. G 0.292 (A) 0.075 (A) <1 (-) 0 (-) >0.05
rs886389 chr6:31166887 HCG27 C - 12 T vs. G 0.075 (T) - >1 (-) 23 (-) >0.05
rs1265069 chr6:31115700 CCHCR1 C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs9380226 chr6:31216746 HLA-C [-19780bp] C - 4 A vs. G - 0.117 (G) >1 (-) 41 (-) >0.05
rs140174668 chr6:31168842 HCG27 C - 12 T vs. C - - >1 (-) 21 (-) >0.05
rs9357117 chr6:31217504 HLA-C [-19022bp] C - 4 A vs. G - 0.125 (G) >1 (-) 41 (-) >0.05
rs3130469 chr6:31196336 HCG27 [+24591bp] C - 12 A vs. T 0.35 (T) 0.258 (T) <1 (-) 48 (-) >0.05
rs3130947 chr6:31195365 HCG27 [+23620bp] C - 12 T vs. G 0.333 (G) 0.258 (G) <1 (-) 48 (-) >0.05
rs2394891 chr6:31205233 HLA-C [-31293bp] C - 12 A vs. G 0.4 (A) 0.483 (A) <1 (-) 0 (-) >0.05
rs3130939 chr6:31198507 HCG27 [+26762bp] C - 12 A vs. G 0.333 (A) 0.258 (A) >1 (-) 48 (-) >0.05
rs6905862 chr6:31127602 TCF19 C - 12 A vs. G 0.417 (A) 0.342 (A) <1 (-) 0 (-) >0.05
rs116988439 chr6:31208256 HLA-C [-28270bp] C - 3 T vs. C - 0.067 (T) >1 (-) 40 (-) >0.05
rs9468889 chr6:31155385 POU5F1 [+6877bp] C - 12 T vs. G - - <1 (-) 25 (-) >0.05
rs3130519 chr6:31195097 HCG27 [+23352bp] C - 12 T vs. C 0.333 (T) 0.267 (T) >1 (-) 49 (-) >0.05
rs3869123 chr6:31209836 HLA-C [-26690bp] C - 3 A vs. G - 0.067 (G) <1 (-) 41 (-) >0.05
rs6913470 chr6:31174662 HCG27 [+2917bp] C - 12 A vs. G - - <1 (-) 7 (-) >0.05
rs2894185 chr6:31204447 HLA-C [-32079bp] C - 12 T vs. G - - >1 (-) 0 (-) >0.05
rs3130527 chr6:31198987 HCG27 [+27242bp] C - 12 T vs. C 0.333 (T) 0.367 (T) >1 (-) 48 (-) >0.05
rs9263868 chr6:31168397 HCG27 C - 12 A vs. G 0.192 (A) 0.092 (A) >1 (-) 41 (-) >0.05
rs2517985 chr6:31118942 CCHCR1 C - 12 T vs. C 0.292 (C) 0.075 (C) >1 (-) 0 (-) >0.05
rs6932070 chr6:31198896 HCG27 [+27151bp] C - 12 T vs. C 0.175 (C) 0.233 (C) >1 (-) 28 (-) >0.05
rs6908994 chr6:31198709 HCG27 [+26964bp] C - 12 T vs. C 0.175 (T) 0.233 (T) <1 (-) 28 (-) >0.05
rs3132513 chr6:31203570 HCG27 [+31825bp] C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs885952 chr6:31139490 POU5F1 C - 12 T vs. C 0.417 (T) 0.342 (T) <1 (-) 18 (-) >0.05
rs112434986 chr6:31154814 POU5F1 [+6306bp] C - 12 A vs. C - - >1 (-) 0 (-) >0.05
rs9468884 chr6:31151319 POU5F1 [+2811bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05

Association studies for this region [+]