HCG27, chr6:31165537-31171745 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6930643 chr6:31174035 HCG27 [+2290bp] All: C 103,235 14 C vs. T - - 0.92 (0.89-0.95) 19 (0-56) 1.23e-06
Meta_image?name=rs6930643

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs115872263 chr6:31210070 HLA-C [-26456bp] C - 6 T vs. C - - <1 (-) 0 (-) >0.05
rs115513668 chr6:31134033 TCF19 C - 11 A vs. T 0.033 (T) - <1 (-) 0 (-) >0.05
rs147539478 chr6:31123434 CCHCR1 C - 4 A vs. C - - <1 (-) 0 (-) >0.05
rs12662550 chr6:31215732 HLA-C [-20794bp] C - 8 A vs. G - - <1 (-) 0 (-) >0.05
rs28397295 chr6:31205096 HLA-C [-31430bp] C - 12 A vs. T 0.175 (A) 0.233 (A) <1 (-) 27 (-) >0.05
rs116781109 chr6:31215112 HLA-C [-21414bp] C - 7 A vs. G - - <1 (-) 0 (-) >0.05
rs7745050 chr6:31203759 HCG27 [+32014bp] C - 12 A vs. C 0.175 (C) - >1 (-) 1 (-) >0.05
rs9263789 chr6:31128329 TCF19 C - 12 A vs. G - - <1 (-) 12 (-) >0.05
rs13409 chr6:31132140 TCF19 C - 12 A vs. G 0.417 (A) 0.342 (A) <1 (-) 0 (-) >0.05
rs9468883 chr6:31151042 POU5F1 [+2534bp] C - 12 A vs. T 0.05 (A) - >1 (-) 14 (-) >0.05
rs2394888 chr6:31202246 HCG27 [+30501bp] C - 12 A vs. G 0.333 (A) 0.192 (A) >1 (-) 48 (-) >0.05
rs1419881 chr6:31130593 TCF19 C - 12 A vs. G 0.45 (A) 0.475 (G) <1 (-) 3 (-) >0.05
rs9501351 chr6:31153126 POU5F1 [+4618bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs2394897 chr6:31213502 HLA-C [-23024bp] C - 11 A vs. G 0.192 (A) 0.092 (A) >1 (-) 4 (-) >0.05
rs9501506 chr6:31153573 POU5F1 [+5065bp] C - 12 T vs. C 0.1 (C) - <1 (-) 0 (-) >0.05
rs4713440 chr6:31150323 POU5F1 [+1815bp] C - 12 A vs. C 0.1 (A) - >1 (-) 0 (-) >0.05
rs7745197 chr6:31203766 HCG27 [+32021bp] C - 12 T vs. C 0.175 (T) - <1 (-) 0 (-) >0.05
rs6913894 chr6:31151997 POU5F1 [+3489bp] C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs149432671 chr6:31156350 POU5F1 [+7842bp] C - 12 A vs. C - - <1 (-) 0 (-) >0.05
rs3130453 chr6:31124849 CCHCR1 C - 12 T vs. C 0.442 (T) 0.358 (T) <1 (-) 24 (-) >0.05
rs17197402 chr6:31154384 POU5F1 [+5876bp] C - 12 A vs. G 0.05 (A) - >1 (-) 0 (-) >0.05
rs3094187 chr6:31126944 TCF19 C - 12 T vs. C 0.475 (T) 0.458 (C) <1 (-) 21 (-) >0.05
rs3095239 chr6:31126790 TCF19 C - 12 A vs. G 0.475 (G) 0.458 (A) >1 (-) 21 (-) >0.05
rs112640945 chr6:31117673 CCHCR1 C - 11 T vs. C 0.067 (T) 0.042 (T) <1 (-) 0 (-) >0.05
rs113932411 chr6:31117695 CCHCR1 C - 11 A vs. G 0.058 (A) 0.033 (A) <1 (-) 0 (-) >0.05
rs1793895 chr6:31192192 HCG27 [+20447bp] C - 12 T vs. G - - <1 (-) 0 (-) >0.05
rs6907451 chr6:31173860 HCG27 [+2115bp] C - 12 A vs. G 0.2 (G) 0.258 (G) >1 (-) 14 (-) >0.05
rs6930438 chr6:31173886 HCG27 [+2141bp] C - 12 T vs. G 0.2 (G) 0.258 (G) >1 (-) 16 (-) >0.05
rs9391817 chr6:31147475 POU5F1 C - 6 T vs. C - - <1 (-) 36 (-) >0.05
rs7453202 chr6:31172225 HCG27 [+480bp] C - 12 A vs. G - - <1 (-) 16 (-) >0.05
rs3132526 chr6:31134175 TCF19 C - 12 T vs. C - - <1 (-) 21 (-) >0.05
rs17197540 chr6:31172044 HCG27 [+299bp] C - 12 T vs. C 0.2 (C) 0.258 (C) >1 (-) 16 (-) >0.05
rs56178408 chr6:31150039 POU5F1 [+1531bp] C - 12 T vs. C 0.108 (T) 0.05 (T) >1 (-) 0 (-) >0.05
rs1639110 chr6:31191636 HCG27 [+19891bp] C - 12 A vs. G 0.183 (A) - <1 (-) 0 (-) >0.05
rs130066 chr6:31122315 CCHCR1 C - 12 C vs. G 0.442 (C) 0.333 (C) <1 (-) 0 (-) >0.05
rs1135811 chr6:31171598 HCG27 C - 12 T vs. C 0.2 (C) 0.25 (C) >1 (-) 16 (-) >0.05
rs1419880 chr6:31135197 POU5F1 C - 12 T vs. C 0.475 (C) 0.467 (T) >1 (-) 21 (-) >0.05
rs3094195 chr6:31135966 POU5F1 C - 12 T vs. C - - <1 (-) 20 (-) >0.05
rs2021375 chr6:31135387 POU5F1 C - 12 A vs. G - - >1 (-) 20 (-) >0.05
rs3130424 chr6:31218239 HLA-C [-18287bp] C - 10 A vs. C 0.225 (C) 0.167 (C) >1 (-) 0 (-) >0.05
rs6913863 chr6:31175015 HCG27 [+3270bp] C - 12 A vs. C 0.2 (A) 0.242 (A) <1 (-) 14 (-) >0.05
rs12665531 chr6:31215916 HLA-C [-20610bp] C - 9 A vs. G 0.192 (A) 0.067 (A) >1 (-) 0 (-) >0.05
rs9263982 chr6:31189985 HCG27 [+18240bp] C - 12 A vs. G - - >1 (-) 11 (-) >0.05
rs111411820 chr6:31207589 HLA-C [-28937bp] C - 12 A vs. C 0.192 (A) 0.083 (A) >1 (-) 15 (-) >0.05
rs3899471 chr6:31215037 HLA-C [-21489bp] C - 9 T vs. C 0.192 (C) 0.083 (C) <1 (-) 0 (-) >0.05
rs115600475 chr6:31117381 CCHCR1 C - 10 A vs. G 0.017 (A) - >1 (-) 0 (-) >0.05
rs17191040 chr6:31154206 POU5F1 [+5698bp] C - 12 T vs. G - - <1 (-) 0 (-) >0.05
rs17190776 chr6:31130865 TCF19 C - 12 A vs. G 0.067 (A) - <1 (-) 0 (-) >0.05
rs2394904 chr6:31216105 HLA-C [-20421bp] C - 9 A vs. G 0.175 (A) 0.083 (A) >1 (-) 0 (-) >0.05
rs9501507 chr6:31153716 POU5F1 [+5208bp] C - 12 T vs. C 0.017 (C) - <1 (-) 0 (-) >0.05

Association studies for this region [+]