HCG27, chr6:31165537-31171745 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6930643 chr6:31174035 HCG27 [+2290bp] All: C 103,235 14 C vs. T - - 0.92 (0.89-0.95) 19 (0-56) 1.23e-06
Meta_image?name=rs6930643

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs115338401 chr6:31221246 HLA-C [-15280bp] C - 4 T vs. C 0.033 (T) - >1 (-) 0 (-) >0.05
rs144605580 chr6:31198020 HCG27 [+26275bp] C - 4 A vs. C - - <1 (-) 35 (-) >0.05
rs3869111 chr6:31190658 HCG27 [+18913bp] C - 12 T vs. C - 0.05 (T) >1 (-) 25 (-) >0.05
rs17191139 chr6:31170821 HCG27 C - 12 A vs. T 0.075 (T) - <1 (-) 7 (-) >0.05
rs3130513 chr6:31178084 HCG27 [+6339bp] C - 12 C vs. G 0.433 (G) 0.5 (G) >1 (-) 63 (-) >0.05
rs112785163 chr6:31121381 CCHCR1 C - 12 C vs. G - - <1 (-) 0 (-) >0.05
rs3130508 chr6:31149520 POU5F1 [+1012bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs1128175 chr6:31150435 POU5F1 [+1927bp] C - 12 A vs. G 0.258 (A) 0.208 (A) >1 (-) 45 (-) >0.05
rs3869115 chr6:31204694 HLA-C [-31832bp] C - 12 C vs. G 0.025 (G) 0.175 (G) <1 (-) 21 (-) >0.05
rs55961910 chr6:31173279 HCG27 [+1534bp] C - 12 A vs. C - - >1 (-) 6 (-) >0.05
rs143334143 chr6:31121426 CCHCR1 C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs9263987 chr6:31191276 HCG27 [+19531bp] C - 12 C vs. G - - <1 (-) 17 (-) >0.05
rs28362354 chr6:31168624 HCG27 C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs9263993 chr6:31192766 HCG27 [+21021bp] C - 12 T vs. C 0.192 (T) 0.142 (T) >1 (-) 0 (-) >0.05
rs74633760 chr6:31127694 TCF19 C - 12 A vs. G 0.067 (G) 0.033 (G) >1 (-) 0 (-) >0.05
rs72856713 chr6:31121958 CCHCR1 C - 12 C vs. G 0.075 (G) 0.033 (G) >1 (-) 0 (-) >0.05
rs139804853 chr6:31144462 POU5F1 C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs9501073 chr6:31164511 HCG27 [-1026bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs5875299 chr6:31204750 HLA-C [-31776bp] C - 5 T vs. C - - >1 (-) 15 (-) >0.05
rs7741829 chr6:31158832 HCG27 [-6705bp] C - 12 T vs. C 0.267 (C) 0.425 (C) >1 (-) 0 (-) >0.05
rs72863813 chr6:31179435 HCG27 [+7690bp] C - 9 A vs. C - - >1 (-) 0 (-) >0.05
rs9501543 chr6:31216956 HLA-C [-19570bp] C - 9 T vs. C - - <1 (-) 0 (-) >0.05
rs117500597 chr6:31207188 HLA-C [-29338bp] C - 5 T vs. C - 0.075 (C) <1 (-) 17 (-) >0.05
rs112279190 chr6:31123147 CCHCR1 C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs148684896 chr6:31174688 HCG27 [+2943bp] C - 4 A vs. G - - >1 (-) 37 (-) >0.05
rs10807083 chr6:31195941 HCG27 [+24196bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs80197567 chr6:31208732 HLA-C [-27794bp] C - 5 T vs. C - 0.067 (T) >1 (-) 18 (-) >0.05
rs113129896 chr6:31123359 CCHCR1 C - 12 C vs. G - - >1 (-) 0 (-) >0.05
rs28857280 chr6:31174810 HCG27 [+3065bp] C - 12 A vs. G - - <1 (-) 4 (-) >0.05
rs3131016 chr6:31152818 POU5F1 [+4310bp] C - 12 A vs. C 0.242 (A) - <1 (-) 21 (-) >0.05
rs9263991 chr6:31192509 HCG27 [+20764bp] C - 12 T vs. C 0.208 (T) 0.125 (T) >1 (-) 17 (-) >0.05
rs114820959 chr6:31179211 HCG27 [+7466bp] C - 12 A vs. T 0.083 (A) - >1 (-) 4 (-) >0.05
rs9461659 chr6:31175392 HCG27 [+3647bp] C - 12 A vs. G 0.067 (A) - >1 (-) 4 (-) >0.05
rs3130458 chr6:31154434 POU5F1 [+5926bp] C - 12 T vs. C - - <1 (-) 22 (-) >0.05
rs720468 chr6:31125993 CCHCR1 C - 12 C vs. G 0.067 (G) - >1 (-) 0 (-) >0.05
rs17197087 chr6:31126232 TCF19 [-87bp] C - 12 T vs. C 0.067 (T) 0.033 (T) <1 (-) 0 (-) >0.05
rs150765547 chr6:31159581 HCG27 [-5956bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs7753180 chr6:31200254 HCG27 [+28509bp] C - 12 C vs. G - - <1 (-) 37 (-) >0.05
rs720467 chr6:31125799 CCHCR1 C - 12 A vs. G 0.067 (A) - <1 (-) 0 (-) >0.05
rs72856718 chr6:31125257 CCHCR1 C - 12 A vs. C 0.05 (A) - <1 (-) 0 (-) >0.05
rs114963023 chr6:31199645 HCG27 [+27900bp] C - 12 T vs. G 0.025 (T) - >1 (-) 4 (-) >0.05
rs138174168 chr6:31186159 HCG27 [+14414bp] C - 10 T vs. C - - <1 (-) 0 (-) >0.05
rs17197101 chr6:31126409 TCF19 C - 12 T vs. G 0.067 (T) 0.033 (T) <1 (-) 0 (-) >0.05
rs9263851 chr6:31156195 POU5F1 [+7687bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs17197395 chr6:31154171 POU5F1 [+5663bp] C - 12 A vs. G 0.05 (G) - <1 (-) 12 (-) >0.05
rs12110822 chr6:31195925 HCG27 [+24180bp] C - 11 A vs. G - - >1 (-) 42 (-) >0.05
rs117552201 chr6:31219257 HLA-C [-17269bp] C - 5 A vs. T - 0.05 (A) >1 (-) 0 (-) >0.05
rs117378644 chr6:31220428 HLA-C [-16098bp] C - 4 A vs. G - 0.075 (G) <1 (-) 14 (-) >0.05
rs80086978 chr6:31180470 HCG27 [+8725bp] C - 12 T vs. C 0.083 (C) 0.042 (C) <1 (-) 2 (-) >0.05
rs3134788 chr6:31153020 POU5F1 [+4512bp] C - 12 T vs. C - - >1 (-) 22 (-) >0.05

Association studies for this region [+]