HCG27, chr6:31165537-31171745 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6930643 chr6:31174035 HCG27 [+2290bp] All: C 103,235 14 C vs. T - - 0.92 (0.89-0.95) 19 (0-56) 1.23e-06
Meta_image?name=rs6930643

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9264132 chr6:31213624 HLA-C [-22902bp] C - 11 C vs. G - - >1 (-) 0 (-) >0.05
rs7759224 chr6:31158468 HCG27 [-7069bp] C - 12 A vs. G 0.083 (G) 0.067 (G) >1 (-) 0 (-) >0.05
rs28362328 chr6:31160678 HCG27 [-4859bp] C - 12 A vs. G 0.083 (A) 0.067 (A) <1 (-) 0 (-) >0.05
rs117857161 chr6:31217168 HLA-C [-19358bp] C - 4 C vs. G - 0.067 (G) <1 (-) 19 (-) >0.05
rs28362323 chr6:31159414 HCG27 [-6123bp] C - 12 T vs. C 0.075 (C) 0.067 (C) >1 (-) 0 (-) >0.05
rs887465 chr6:31143652 POU5F1 C - 12 C vs. G 0.225 (G) 0.042 (G) >1 (-) 0 (-) >0.05
rs73401062 chr6:31149310 POU5F1 [+802bp] C - 12 A vs. G 0.025 (G) - <1 (-) 4 (-) >0.05
rs9263876 chr6:31171167 HCG27 C - 12 C vs. G 0.092 (G) 0.033 (G) >1 (-) 0 (-) >0.05
rs56352748 chr6:31216223 HLA-C [-20303bp] C - 9 A vs. C 0.05 (A) - >1 (-) 10 (-) >0.05
rs116939167 chr6:31216926 HLA-C [-19600bp] C - 4 T vs. C - 0.067 (T) >1 (-) 19 (-) >0.05
rs9263870 chr6:31170514 HCG27 C - 12 A vs. G 0.092 (G) 0.067 (G) >1 (-) 0 (-) >0.05
rs117232593 chr6:31216704 HLA-C [-19822bp] C - 4 T vs. C - 0.067 (T) >1 (-) 20 (-) >0.05
chr6:31159809 chr6:31159809 HCG27 [-5728bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs28362349 chr6:31166598 HCG27 C - 12 A vs. G 0.083 (A) 0.067 (A) <1 (-) 0 (-) >0.05
rs3130459 chr6:31154633 POU5F1 [+6125bp] C - 12 T vs. C 0.225 (C) - >1 (-) 2 (-) >0.05
rs28362350 chr6:31166625 HCG27 C - 12 C vs. G 0.083 (C) 0.05 (C) <1 (-) 0 (-) >0.05
rs9263961 chr6:31184903 HCG27 [+13158bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs9263879 chr6:31171581 HCG27 C - 12 A vs. G 0.1 (A) 0.067 (A) <1 (-) 0 (-) >0.05
rs9263880 chr6:31171830 HCG27 [+85bp] C - 12 T vs. C 0.092 (T) 0.067 (T) <1 (-) 0 (-) >0.05
rs1265115 chr6:31117075 CCHCR1 C - 12 A vs. C 0.3 (A) 0.5 (A) <1 (-) 0 (-) >0.05
rs28362352 chr6:31168387 HCG27 C - 12 A vs. G 0.083 (A) 0.067 (A) <1 (-) 0 (-) >0.05
rs28362351 chr6:31167760 HCG27 C - 12 T vs. C 0.083 (T) 0.058 (T) <1 (-) 0 (-) >0.05
rs1062630 chr6:31138107 POU5F1 C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs28362353 chr6:31168571 HCG27 C - 12 T vs. C 0.067 (T) 0.067 (T) <1 (-) 0 (-) >0.05
rs9501535 chr6:31208806 HLA-C [-27720bp] C - 10 A vs. G - - <1 (-) 41 (-) >0.05
rs117281875 chr6:31216104 HLA-C [-20422bp] C - 4 T vs. C - 0.083 (T) >1 (-) 21 (-) >0.05
rs887468 chr6:31141523 POU5F1 C - 12 T vs. C 0.25 (T) 0.058 (T) <1 (-) 34 (-) >0.05
rs116954629 chr6:31215793 HLA-C [-20733bp] C - 4 C vs. G - 0.067 (G) <1 (-) 21 (-) >0.05
rs118025913 chr6:31215537 HLA-C [-20989bp] C - 4 T vs. C - 0.067 (T) >1 (-) 21 (-) >0.05
rs130065 chr6:31122500 CCHCR1 C - 12 A vs. G 0.225 (A) 0.05 (A) <1 (-) 8 (-) >0.05
rs28507710 chr6:31197197 HCG27 [+25452bp] C - 11 T vs. C - 0.108 (C) <1 (-) 40 (-) >0.05
rs9263895 chr6:31173939 HCG27 [+2194bp] C - 12 T vs. C 0.083 (C) 0.042 (C) >1 (-) 0 (-) >0.05
rs4446605 chr6:31173096 HCG27 [+1351bp] C - 12 A vs. G 0.092 (G) 0.067 (G) >1 (-) 0 (-) >0.05
rs9263893 chr6:31173906 HCG27 [+2161bp] C - 12 A vs. G 0.092 (A) 0.05 (A) <1 (-) 0 (-) >0.05
rs9501525 chr6:31191978 HCG27 [+20233bp] C - 9 A vs. G - - >1 (-) 0 (-) >0.05
rs143767978 chr6:31214716 HLA-C [-21810bp] C - 4 T vs. G - - >1 (-) 22 (-) >0.05
rs9501510 chr6:31163667 HCG27 [-1870bp] C - 12 T vs. G - - <1 (-) 0 (-) >0.05
rs7753892 chr6:31154262 POU5F1 [+5754bp] C - 12 T vs. C 0.275 (C) 0.408 (C) >1 (-) 0 (-) >0.05
rs9263897 chr6:31174385 HCG27 [+2640bp] C - 12 A vs. G 0.092 (G) 0.067 (G) >1 (-) 0 (-) >0.05
rs28362361 chr6:31169933 HCG27 C - 12 A vs. G 0.1 (G) 0.058 (G) >1 (-) 0 (-) >0.05
rs73728280 chr6:31141827 POU5F1 C - 12 A vs. G 0.025 (A) - >1 (-) 0 (-) >0.05
chr6:31208999 chr6:31208999 HLA-C [-27527bp] C - 4 T vs. C - - >1 (-) 7 (-) >0.05
rs112833418 chr6:31195459 HCG27 [+23714bp] C - 12 A vs. G 0.108 (A) - <1 (-) 0 (-) >0.05
rs3869120 chr6:31207884 HLA-C [-28642bp] C - 12 A vs. G 0.042 (G) 0.05 (G) <1 (-) 0 (-) >0.05
rs57568041 chr6:31205868 HLA-C [-30658bp] C - 11 A vs. G - - >1 (-) 40 (-) >0.05
rs58164018 chr6:31205888 HLA-C [-30638bp] C - 11 T vs. C - - <1 (-) 40 (-) >0.05
rs9501532 chr6:31201665 HCG27 [+29920bp] C - 12 A vs. C - - <1 (-) 36 (-) >0.05
rs7756999 chr6:31206408 HLA-C [-30118bp] C - 12 T vs. C - - >1 (-) 2 (-) >0.05
chr6:31219451 chr6:31219451 HLA-C [-17075bp] C - 3 A vs. G - - >1 (-) 0 (-) >0.05
rs3094191 chr6:31138910 POU5F1 C - 12 T vs. C 0.225 (C) - >1 (-) 14 (-) >0.05

Association studies for this region [+]