HCG27, chr6:31165537-31171745 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6930643 chr6:31174035 HCG27 [+2290bp] All: C 103,235 14 C vs. T - - 0.92 (0.89-0.95) 19 (0-56) 1.23e-06
Meta_image?name=rs6930643

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9263907 chr6:31175283 HCG27 [+3538bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs79793668 chr6:31158398 HCG27 [-7139bp] C - 9 T vs. C - - <1 (-) 0 (-) >0.05
rs9391815 chr6:31145116 POU5F1 C - 12 T vs. C 0.225 (T) 0.408 (T) <1 (-) 0 (-) >0.05
rs143407040 chr6:31172272 HCG27 [+527bp] C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs9468878 chr6:31143155 POU5F1 C - 8 A vs. G - - >1 (-) 0 (-) >0.05
rs9263911 chr6:31175667 HCG27 [+3922bp] C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs9501530 chr6:31201207 HCG27 [+29462bp] C - 12 A vs. G - - <1 (-) 36 (-) >0.05
rs11489181 chr6:31176151 HCG27 [+4406bp] C - 9 A vs. T - - >1 (-) 0 (-) >0.05
rs150561730 chr6:31175262 HCG27 [+3517bp] C - 12 A vs. G - - >1 (-) 14 (-) >0.05
rs9461661 chr6:31176039 HCG27 [+4294bp] C - 9 T vs. C - - >1 (-) 0 (-) >0.05
rs6927324 chr6:31194764 HCG27 [+23019bp] C - 12 A vs. C 0.2 (C) 0.233 (C) >1 (-) 46 (-) >0.05
rs73401031 chr6:31134482 TCF19 C - 12 A vs. C 0.025 (A) - >1 (-) 0 (-) >0.05
rs72863883 chr6:31206445 HLA-C [-30081bp] C - 7 A vs. G - - <1 (-) 24 (-) >0.05
rs9263930 chr6:31178376 HCG27 [+6631bp] C - 12 A vs. G 0.092 (G) - >1 (-) 0 (-) >0.05
rs76269054 chr6:31152881 POU5F1 [+4373bp] C - 6 A vs. C - - <1 (-) 0 (-) >0.05
rs72502551 chr6:31210429 HLA-C [-26097bp] C - 3 T vs. C - - <1 (-) 0 (-) >0.05
rs6922051 chr6:31154820 POU5F1 [+6312bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs151157774 chr6:31119121 CCHCR1 C - 8 A vs. C - - >1 (-) 0 (-) >0.05
rs4416711 chr6:31221039 HLA-C [-15487bp] C - 8 T vs. C 0.025 (T) - >1 (-) 0 (-) >0.05
rs73728443 chr6:31208355 HLA-C [-28171bp] C - 11 A vs. G - - <1 (-) 39 (-) >0.05
rs9263970 chr6:31186601 HCG27 [+14856bp] C - 12 A vs. C 0.233 (C) 0.067 (C) >1 (-) 0 (-) >0.05
rs9263969 chr6:31186534 HCG27 [+14789bp] C - 12 T vs. C 0.233 (T) 0.083 (T) <1 (-) 0 (-) >0.05
rs115852153 chr6:31184525 HCG27 [+12780bp] C - 12 A vs. C 0.075 (A) 0.042 (A) >1 (-) 12 (-) >0.05
rs1793891 chr6:31221698 HLA-C [-14828bp] C - 4 T vs. C 0.233 (T) 0.058 (T) <1 (-) 40 (-) >0.05
rs9468882 chr6:31151039 POU5F1 [+2531bp] C - 12 A vs. T 0.25 (A) - <1 (-) 0 (-) >0.05
rs9468904 chr6:31209169 HLA-C [-27357bp] C - 11 C vs. G - - >1 (-) 39 (-) >0.05
rs9263922 chr6:31177981 HCG27 [+6236bp] C - 12 T vs. C 0.092 (T) 0.058 (T) <1 (-) 0 (-) >0.05
rs9263923 chr6:31177985 HCG27 [+6240bp] C - 12 C vs. G 0.092 (C) 0.058 (C) <1 (-) 0 (-) >0.05
rs9263916 chr6:31176928 HCG27 [+5183bp] C - 12 T vs. C 0.092 (C) 0.05 (C) >1 (-) 0 (-) >0.05
rs149117798 chr6:31208875 HLA-C [-27651bp] C - 9 T vs. C - - >1 (-) 0 (-) >0.05
rs130067 chr6:31118511 CCHCR1 C - 12 T vs. G 0.192 (G) 0.292 (G) >1 (-) 0 (-) >0.05
rs3130465 chr6:31166352 HCG27 C - 12 A vs. G - - >1 (-) 18 (-) >0.05
rs9263942 chr6:31180215 HCG27 [+8470bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs3899686 chr6:31193916 HCG27 [+22171bp] C - 12 A vs. G 0.483 (A) 0.267 (A) <1 (-) 0 (-) >0.05
rs9263932 chr6:31178613 HCG27 [+6868bp] C - 12 A vs. C - 0.05 (A) <1 (-) 0 (-) >0.05
rs28894982 chr6:31188474 HCG27 [+16729bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs9263951 chr6:31181270 HCG27 [+9525bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs9263963 chr6:31186026 HCG27 [+14281bp] C - 12 A vs. T 0.092 (T) 0.067 (T) >1 (-) 0 (-) >0.05
rs9263846 chr6:31155670 POU5F1 [+7162bp] C - 12 A vs. G 0.108 (A) 0.083 (A) <1 (-) 0 (-) >0.05
rs9263845 chr6:31155659 POU5F1 [+7151bp] C - 12 A vs. G 0.108 (A) 0.083 (A) <1 (-) 0 (-) >0.05
chr6:31205851 chr6:31205851 HLA-C [-30675bp] C - 5 T vs. C - - >1 (-) 1 (-) >0.05
rs3094662 chr6:31121945 CCHCR1 C - 12 A vs. C 0.225 (C) 0.075 (C) >1 (-) 11 (-) >0.05
rs115320563 chr6:31188708 HCG27 [+16963bp] C - 12 T vs. C 0.083 (T) 0.083 (T) >1 (-) 4 (-) >0.05
rs9501088 chr6:31185059 HCG27 [+13314bp] C - 12 T vs. G - - <1 (-) 0 (-) >0.05
rs4098923 chr6:31193756 HCG27 [+22011bp] C - 12 A vs. G 0.475 (G) 0.233 (G) >1 (-) 0 (-) >0.05
rs1265068 chr6:31115711 CCHCR1 C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs130076 chr6:31122482 CCHCR1 C - 12 A vs. G 0.225 (A) 0.033 (A) <1 (-) 11 (-) >0.05
rs9263941 chr6:31180055 HCG27 [+8310bp] C - 12 A vs. G 0.092 (A) 0.05 (A) <1 (-) 0 (-) >0.05
rs9263943 chr6:31180339 HCG27 [+8594bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs9263949 chr6:31181092 HCG27 [+9347bp] C - 12 T vs. C 0.092 (C) - >1 (-) 0 (-) >0.05

Association studies for this region [+]