HCG27, chr6:31165537-31171745 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6930643 chr6:31174035 HCG27 [+2290bp] All: C 103,235 14 C vs. T - - 0.92 (0.89-0.95) 19 (0-56) 1.23e-06
Meta_image?name=rs6930643

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs28360051 chr6:31142261 POU5F1 C - 3 A vs. G 0.033 (A) - <1 (-) 48 (-) >0.05
rs9263950 chr6:31181196 HCG27 [+9451bp] C - 12 C vs. G - 0.067 (C) <1 (-) 0 (-) >0.05
rs7773389 chr6:31200321 HCG27 [+28576bp] C - 12 A vs. T - - >1 (-) 9 (-) >0.05
rs9263977 chr6:31187529 HCG27 [+15784bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs9263976 chr6:31187414 HCG27 [+15669bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs9263946 chr6:31180642 HCG27 [+8897bp] C - 12 T vs. C 0.092 (C) 0.067 (C) >1 (-) 0 (-) >0.05
rs9263990 chr6:31192215 HCG27 [+20470bp] C - 12 T vs. C 0.075 (T) 0.058 (T) <1 (-) 0 (-) >0.05
rs9263954 chr6:31182021 HCG27 [+10276bp] C - 12 A vs. T 0.092 (A) - <1 (-) 0 (-) >0.05
rs142609027 chr6:31218474 HLA-C [-18052bp] C - 3 T vs. C - - <1 (-) 0 (-) >0.05
rs9263974 chr6:31186869 HCG27 [+15124bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs9263971 chr6:31186647 HCG27 [+14902bp] C - 12 T vs. C 0.092 (T) - <1 (-) 0 (-) >0.05
rs9263959 chr6:31184553 HCG27 [+12808bp] C - 12 C vs. G 0.092 (C) 0.05 (C) <1 (-) 0 (-) >0.05
rs9263966 chr6:31186230 HCG27 [+14485bp] C - 12 T vs. C 0.092 (T) 0.067 (T) <1 (-) 0 (-) >0.05
rs9263957 chr6:31184175 HCG27 [+12430bp] C - 12 A vs. G 0.092 (A) 0.067 (A) <1 (-) 0 (-) >0.05
rs9263965 chr6:31186083 HCG27 [+14338bp] C - 12 C vs. G 0.092 (C) 0.067 (C) <1 (-) 0 (-) >0.05
rs9263972 chr6:31186837 HCG27 [+15092bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs9263962 chr6:31185803 HCG27 [+14058bp] C - 12 A vs. G 0.092 (A) 0.067 (A) <1 (-) 0 (-) >0.05
rs9263948 chr6:31181025 HCG27 [+9280bp] C - 12 T vs. C 0.092 (T) 0.067 (T) <1 (-) 0 (-) >0.05
rs3131018 chr6:31143582 POU5F1 C - 12 A vs. C 0.433 (A) 0.242 (A) >1 (-) 61 (-) >0.05
rs9468900 chr6:31192998 HCG27 [+21253bp] C - 12 A vs. G 0.208 (A) 0.233 (A) <1 (-) 57 (-) >0.05
rs145825475 chr6:31178994 HCG27 [+7249bp] C - 4 A vs. G - - <1 (-) 0 (-) >0.05
rs3130506 chr6:31145451 POU5F1 C - 12 A vs. G 0.433 (G) 0.25 (G) <1 (-) 60 (-) >0.05
rs117922333 chr6:31211045 HLA-C [-25481bp] C - 4 C vs. G - 0.067 (C) >1 (-) 15 (-) >0.05
rs9263955 chr6:31182059 HCG27 [+10314bp] C - 12 A vs. G 0.1 (A) 0.067 (A) <1 (-) 0 (-) >0.05
rs117506082 chr6:31213225 HLA-C [-23301bp] C - 4 A vs. G - 0.067 (G) <1 (-) 15 (-) >0.05
rs7757983 chr6:31193764 HCG27 [+22019bp] C - 12 T vs. C 0.475 (T) 0.233 (T) <1 (-) 0 (-) >0.05
rs9501541 chr6:31209914 HLA-C [-26612bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs6921492 chr6:31170877 HCG27 C - 10 T vs. C - - >1 (-) 25 (-) >0.05
rs117262920 chr6:31213368 HLA-C [-23158bp] C - 4 A vs. G - 0.067 (G) <1 (-) 16 (-) >0.05
rs9264069 chr6:31199981 HCG27 [+28236bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs55839536 chr6:31219958 HLA-C [-16568bp] C - 6 A vs. G 0.167 (A) 0.075 (A) >1 (-) 27 (-) >0.05
rs28572463 chr6:31209854 HLA-C [-26672bp] C - 12 C vs. G - - >1 (-) 0 (-) >0.05
chr6:31211119 chr6:31211119 HLA-C [-25407bp] C - 4 T vs. C - - >1 (-) 0 (-) >0.05
rs117158609 chr6:31216393 HLA-C [-20133bp] C - 3 T vs. C - 0.067 (T) >1 (-) 33 (-) >0.05
rs1150765 chr6:31127562 TCF19 C - 12 T vs. C 0.225 (T) - <1 (-) 19 (-) >0.05
rs6913070 chr6:31151740 POU5F1 [+3232bp] C - 12 T vs. C 0.025 (T) 0.15 (T) <1 (-) 0 (-) >0.05
rs720466 chr6:31125705 CCHCR1 C - 12 C vs. G 0.225 (G) - >1 (-) 19 (-) >0.05
rs116763857 chr6:31141482 POU5F1 C - 9 T vs. G 0.025 (G) - <1 (-) 0 (-) >0.05
rs149713840 chr6:31210290 HLA-C [-26236bp] C - 7 C vs. G - - >1 (-) 5 (-) >0.05
rs3131014 chr6:31116627 CCHCR1 C - 12 A vs. G 0.142 (A) - <1 (-) 0 (-) >0.05
rs200998500 chr6:31149062 POU5F1 [+554bp] C - 8 A vs. G - - >1 (-) 19 (-) >0.05
rs34481210 chr6:31219777 HLA-C [-16749bp] C - 5 A vs. C - 0.067 (C) <1 (-) 58 (-) >0.05
rs116227766 chr6:31219650 HLA-C [-16876bp] C - 5 T vs. C - 0.083 (T) >1 (-) 58 (-) >0.05
rs3132534 chr6:31116636 CCHCR1 C - 12 A vs. G 0.15 (A) - <1 (-) 11 (-) >0.05
rs35887284 chr6:31184463 HCG27 [+12718bp] C - 12 A vs. G 0.225 (G) 0.325 (G) <1 (-) 52 (-) >0.05
rs6927444 chr6:31192847 HCG27 [+21102bp] C - 12 T vs. C 0.208 (C) 0.233 (C) >1 (-) 57 (-) >0.05
rs1639108 chr6:31196554 HCG27 [+24809bp] C - 11 T vs. C 0.15 (C) - >1 (-) 0 (-) >0.05
rs3130948 chr6:31193523 HCG27 [+21778bp] C - 12 T vs. C 0.242 (T) 0.208 (T) <1 (-) 0 (-) >0.05
rs35997521 chr6:31219693 HLA-C [-16833bp] C - 5 A vs. G - - >1 (-) 59 (-) >0.05
rs4373355 chr6:31193155 HCG27 [+21410bp] C - 12 T vs. C 0.342 (C) 0.125 (C) <1 (-) 5 (-) >0.05

Association studies for this region [+]