HCG27, chr6:31165537-31171745 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6930643 chr6:31174035 HCG27 [+2290bp] All: C 103,235 14 C vs. T - - 0.92 (0.89-0.95) 19 (0-56) 1.23e-06
Meta_image?name=rs6930643

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs28360991 chr6:31182486 HCG27 [+10741bp] C - 12 A vs. G 0.142 (A) 0.017 (A) <1 (-) 0 (-) >0.05
rs115616450 chr6:31204186 HLA-C [-32340bp] C - 10 A vs. C 0.042 (A) - <1 (-) 0 (-) >0.05
rs9263881 chr6:31171924 HCG27 [+179bp] C - 12 A vs. G 0.2 (G) 0.042 (G) <1 (-) 41 (-) >0.05
rs4516988 chr6:31176602 HCG27 [+4857bp] C - 12 A vs. G 0.225 (G) 0.058 (G) <1 (-) 0 (-) >0.05
rs3887382 chr6:31172332 HCG27 [+587bp] C - 12 A vs. C - - >1 (-) 41 (-) >0.05
rs9263794 chr6:31130019 TCF19 C - 12 A vs. G 0.175 (G) 0.033 (G) >1 (-) 0 (-) >0.05
rs9263886 chr6:31172879 HCG27 [+1134bp] C - 12 A vs. T 0.2 (T) 0.042 (T) <1 (-) 41 (-) >0.05
rs149645945 chr6:31188102 HCG27 [+16357bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs12660585 chr6:31173768 HCG27 [+2023bp] C - 12 A vs. G 0.2 (G) 0.042 (G) <1 (-) 41 (-) >0.05
rs9263809 chr6:31136577 POU5F1 C - 12 A vs. G 0.175 (G) 0.033 (G) >1 (-) 0 (-) >0.05
rs117265349 chr6:31138692 POU5F1 C - 11 A vs. G - 0.067 (A) >1 (-) 0 (-) >0.05
rs28744257 chr6:31186904 HCG27 [+15159bp] C - 12 A vs. G 0.142 (G) - >1 (-) 0 (-) >0.05
rs146861748 chr6:31156232 POU5F1 [+7724bp] C - 3 T vs. C - - >1 (-) 0 (-) >0.05
rs10456394 chr6:31188200 HCG27 [+16455bp] C - 12 T vs. G 0.142 (G) - >1 (-) 0 (-) >0.05
rs28744265 chr6:31188315 HCG27 [+16570bp] C - 12 A vs. C 0.142 (C) - >1 (-) 0 (-) >0.05
rs28744256 chr6:31186883 HCG27 [+15138bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs9263811 chr6:31137745 POU5F1 C - 12 T vs. C 0.175 (T) 0.05 (T) <1 (-) 0 (-) >0.05
rs17191265 chr6:31178187 HCG27 [+6442bp] C - 12 T vs. C 0.142 (C) - >1 (-) 0 (-) >0.05
rs28360994 chr6:31186208 HCG27 [+14463bp] C - 12 A vs. G 0.142 (G) - >1 (-) 0 (-) >0.05
rs9263810 chr6:31137632 POU5F1 C - 12 C vs. G 0.175 (C) - <1 (-) 0 (-) >0.05
rs1639114 chr6:31219224 HLA-C [-17302bp] C - 9 A vs. C - - >1 (-) 0 (-) >0.05
rs9263768 chr6:31119049 CCHCR1 C - 12 T vs. C 0.183 (T) 0.033 (T) <1 (-) 0 (-) >0.05
rs35379787 chr6:31179117 HCG27 [+7372bp] C - 12 A vs. G 0.233 (A) 0.325 (A) >1 (-) 54 (-) >0.05
rs28361002 chr6:31189543 HCG27 [+17798bp] C - 12 A vs. G 0.133 (G) - >1 (-) 0 (-) >0.05
rs75120303 chr6:31199165 HCG27 [+27420bp] C - 10 A vs. G 0.025 (A) 0.1 (A) <1 (-) 0 (-) >0.05
rs28361001 chr6:31189521 HCG27 [+17776bp] C - 12 C vs. G - - >1 (-) 0 (-) >0.05
rs28744271 chr6:31193798 HCG27 [+22053bp] C - 12 A vs. G 0.175 (G) - >1 (-) 0 (-) >0.05
rs28361000 chr6:31189498 HCG27 [+17753bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs9263849 chr6:31156131 POU5F1 [+7623bp] C - 12 T vs. G - - <1 (-) 0 (-) >0.05
rs9263816 chr6:31138797 POU5F1 C - 12 T vs. G 0.175 (T) 0.033 (T) <1 (-) 0 (-) >0.05
rs117308456 chr6:31218704 HLA-C [-17822bp] C - 5 A vs. G - 0.1 (A) >1 (-) 0 (-) >0.05
rs3998428 chr6:31116946 CCHCR1 C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs11489180 chr6:31174111 HCG27 [+2366bp] C - 12 T vs. C - - >1 (-) 41 (-) >0.05
rs9263800 chr6:31134599 TCF19 C - 12 A vs. G 0.175 (A) 0.033 (A) <1 (-) 0 (-) >0.05
rs2394885 chr6:31174590 HCG27 [+2845bp] C - 12 C vs. G 0.192 (C) 0.042 (C) >1 (-) 41 (-) >0.05
rs9501523 chr6:31184552 HCG27 [+12807bp] C - 5 T vs. C 0.008 (T) - <1 (-) 0 (-) >0.05
rs9263802 chr6:31135136 POU5F1 C - 12 T vs. C 0.175 (T) 0.05 (T) <1 (-) 0 (-) >0.05
rs28360999 chr6:31189219 HCG27 [+17474bp] C - 12 A vs. G 0.142 (A) - <1 (-) 0 (-) >0.05
rs28744239 chr6:31174758 HCG27 [+3013bp] C - 12 C vs. G - - >1 (-) 41 (-) >0.05
rs28744259 chr6:31187334 HCG27 [+15589bp] C - 12 A vs. C 0.142 (A) - <1 (-) 0 (-) >0.05
rs1044870 chr6:31130821 TCF19 C - 12 T vs. C 0.175 (T) 0.033 (T) <1 (-) 0 (-) >0.05
rs9263796 chr6:31132883 TCF19 C - 12 T vs. C 0.175 (T) 0.033 (T) <1 (-) 0 (-) >0.05
rs9263792 chr6:31128673 TCF19 C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs9263790 chr6:31128411 TCF19 C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs112056872 chr6:31192675 HCG27 [+20930bp] C - 12 A vs. T 0.158 (T) 0.075 (T) >1 (-) 5 (-) >0.05
rs28744240 chr6:31175190 HCG27 [+3445bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
chr6:31182972 chr6:31182972 HCG27 [+11227bp] C - 4 T vs. G - - >1 (-) 0 (-) >0.05
rs9501079 chr6:31175097 HCG27 [+3352bp] C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs28744263 chr6:31188053 HCG27 [+16308bp] C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs144885162 chr6:31122564 CCHCR1 C - 6 C vs. G - - >1 (-) 0 (-) >0.05

Association studies for this region [+]