HCG27, chr6:31165537-31171745 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6930643 chr6:31174035 HCG27 [+2290bp] All: C 103,235 14 C vs. T - - 0.92 (0.89-0.95) 19 (0-56) 1.23e-06
Meta_image?name=rs6930643

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs115686299 chr6:31210463 HLA-C [-26063bp] C - 10 A vs. G 0.025 (A) 0.083 (A) <1 (-) 0 (-) >0.05
rs113831989 chr6:31191294 HCG27 [+19549bp] C - 12 T vs. C 0.15 (T) 0.075 (T) <1 (-) 6 (-) >0.05
rs34448769 chr6:31179226 HCG27 [+7481bp] C - 12 A vs. C 0.233 (A) 0.325 (A) >1 (-) 55 (-) >0.05
rs9295956 chr6:31144912 POU5F1 C - 11 A vs. G - - <1 (-) 0 (-) >0.05
rs145044939 chr6:31131788 TCF19 C - 8 A vs. T - - >1 (-) 0 (-) >0.05
rs28744272 chr6:31193906 HCG27 [+22161bp] C - 12 A vs. G 0.175 (G) - >1 (-) 0 (-) >0.05
rs142447162 chr6:31156863 POU5F1 [+8355bp] C - 8 T vs. C - - <1 (-) 0 (-) >0.05
rs28361015 chr6:31193480 HCG27 [+21735bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs34527556 chr6:31179140 HCG27 [+7395bp] C - 12 A vs. G 0.225 (G) 0.325 (G) <1 (-) 55 (-) >0.05
rs113565451 chr6:31190175 HCG27 [+18430bp] C - 12 T vs. C 0.158 (T) - <1 (-) 7 (-) >0.05
rs9357111 chr6:31147916 POU5F1 C - 12 T vs. C 0.308 (T) 0.492 (C) >1 (-) 1 (-) >0.05
rs116821537 chr6:31179137 HCG27 [+7392bp] C - 12 A vs. G 0.025 (G) 0.017 (G) <1 (-) 0 (-) >0.05
rs34221098 chr6:31179014 HCG27 [+7269bp] C - 12 A vs. G 0.233 (G) 0.325 (G) <1 (-) 55 (-) >0.05
rs140186488 chr6:31181073 HCG27 [+9328bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs28744270 chr6:31193698 HCG27 [+21953bp] C - 12 C vs. G 0.175 (C) - <1 (-) 0 (-) >0.05
rs12662527 chr6:31190897 HCG27 [+19152bp] C - 12 A vs. G 0.15 (A) 0.075 (A) <1 (-) 7 (-) >0.05
rs9263756 chr6:31115655 CCHCR1 C - 12 T vs. C - - <1 (-) 5 (-) >0.05
rs17197693 chr6:31178676 HCG27 [+6931bp] C - 12 T vs. C 0.233 (C) 0.325 (C) <1 (-) 55 (-) >0.05
rs12662501 chr6:31190850 HCG27 [+19105bp] C - 12 T vs. C 0.158 (T) 0.075 (T) <1 (-) 7 (-) >0.05
rs9263981 chr6:31189382 HCG27 [+17637bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs34328664 chr6:31178901 HCG27 [+7156bp] C - 12 A vs. G 0.233 (A) 0.308 (A) >1 (-) 56 (-) >0.05
rs149837246 chr6:31202189 HCG27 [+30444bp] C - 10 T vs. C - - <1 (-) 0 (-) >0.05
rs17191342 chr6:31178605 HCG27 [+6860bp] C - 12 T vs. C 0.242 (T) 0.308 (T) >1 (-) 55 (-) >0.05
rs17197707 chr6:31178780 HCG27 [+7035bp] C - 12 A vs. T 0.233 (T) 0.317 (T) <1 (-) 55 (-) >0.05
rs10947150 chr6:31180003 HCG27 [+8258bp] C - 12 A vs. G 0.233 (G) 0.317 (G) <1 (-) 56 (-) >0.05
rs73728468 chr6:31220425 HLA-C [-16101bp] C - 5 A vs. G - - >1 (-) 54 (-) >0.05
rs17191307 chr6:31178371 HCG27 [+6626bp] C - 12 T vs. G 0.233 (G) 0.317 (G) <1 (-) 56 (-) >0.05
rs62399809 chr6:31197914 HCG27 [+26169bp] C - 7 C vs. G - - >1 (-) 0 (-) >0.05
rs10947149 chr6:31179747 HCG27 [+8002bp] C - 12 T vs. C - - >1 (-) 56 (-) >0.05
rs11751160 chr6:31179672 HCG27 [+7927bp] C - 12 C vs. G 0.233 (C) 0.325 (C) >1 (-) 56 (-) >0.05
rs9263994 chr6:31192952 HCG27 [+21207bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs139277467 chr6:31174608 HCG27 [+2863bp] C - 12 A vs. C - - <1 (-) 0 (-) >0.05
rs73728467 chr6:31220309 HLA-C [-16217bp] C - 5 A vs. G - - >1 (-) 54 (-) >0.05
rs79860141 chr6:31210599 HLA-C [-25927bp] C - 10 A vs. C 0.025 (A) 0.092 (A) <1 (-) 0 (-) >0.05
rs28361016 chr6:31194240 HCG27 [+22495bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs80227257 chr6:31211106 HLA-C [-25420bp] C - 10 T vs. C 0.025 (C) 0.1 (C) >1 (-) 0 (-) >0.05
rs9263989 chr6:31191380 HCG27 [+19635bp] C - 12 A vs. G 0.017 (A) 0.05 (A) >1 (-) 0 (-) >0.05
rs76977405 chr6:31211064 HLA-C [-25462bp] C - 10 T vs. G 0.025 (G) 0.092 (G) >1 (-) 0 (-) >0.05
rs79433188 chr6:31211200 HLA-C [-25326bp] C - 10 A vs. G - 0.092 (G) >1 (-) 0 (-) >0.05
rs113196314 chr6:31210946 HLA-C [-25580bp] C - 10 A vs. T 0.025 (A) 0.1 (A) <1 (-) 0 (-) >0.05
rs28361030 chr6:31220274 HLA-C [-16252bp] C - 6 A vs. G 0.167 (A) - <1 (-) 0 (-) >0.05
rs77582287 chr6:31210876 HLA-C [-25650bp] C - 10 T vs. C 0.025 (C) 0.092 (C) >1 (-) 0 (-) >0.05
rs113752692 chr6:31203689 HCG27 [+31944bp] C - 10 A vs. G 0.017 (G) 0.083 (G) >1 (-) 0 (-) >0.05
rs145021772 chr6:31189460 HCG27 [+17715bp] C - 12 T vs. C - - <1 (-) 4 (-) >0.05
rs150632192 chr6:31164263 HCG27 [-1274bp] C - 12 A vs. G - - <1 (-) 5 (-) >0.05
rs4947305 chr6:31144429 POU5F1 C - 12 A vs. G 0.308 (G) 0.483 (A) <1 (-) 0 (-) >0.05
rs28361027 chr6:31213744 HLA-C [-22782bp] C - 9 A vs. T 0.15 (A) 0.125 (A) <1 (-) 0 (-) >0.05
rs78830524 chr6:31213143 HLA-C [-23383bp] C - 10 T vs. G - 0.092 (T) <1 (-) 0 (-) >0.05
rs130070 chr6:31116220 CCHCR1 C - 12 A vs. G 0.167 (A) - <1 (-) 0 (-) >0.05
rs9263778 chr6:31123157 CCHCR1 C - 12 A vs. G - - <1 (-) 0 (-) >0.05

Association studies for this region [+]