HCG27, chr6:31165537-31171745 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6930643 chr6:31174035 HCG27 [+2290bp] All: C 103,235 14 C vs. T - - 0.92 (0.89-0.95) 19 (0-56) 1.23e-06
Meta_image?name=rs6930643

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6922382 chr6:31164220 HCG27 [-1317bp] C - 12 A vs. G - - <1 (-) 5 (-) >0.05
rs77058242 chr6:31209820 HLA-C [-26706bp] C - 10 A vs. T 0.025 (A) 0.108 (A) <1 (-) 0 (-) >0.05
rs78426493 chr6:31209458 HLA-C [-27068bp] C - 10 T vs. C 0.025 (T) 0.1 (T) <1 (-) 0 (-) >0.05
rs6921801 chr6:31163853 HCG27 [-1684bp] C - 12 C vs. G - - <1 (-) 0 (-) >0.05
rs144232425 chr6:31151118 POU5F1 [+2610bp] C - 12 T vs. C - - <1 (-) 2 (-) >0.05
rs45506394 chr6:31133677 TCF19 C - 11 A vs. G 0.033 (A) - >1 (-) 12 (-) >0.05
rs28360990 chr6:31182479 HCG27 [+10734bp] C - 11 A vs. T 0.142 (A) - <1 (-) 0 (-) >0.05
rs6904246 chr6:31168200 HCG27 C - 12 A vs. G 0.017 (A) - >1 (-) 1 (-) >0.05
rs71563311 chr6:31136994 POU5F1 C - 12 A vs. C 0.008 (A) - <1 (-) 0 (-) >0.05
rs146323972 chr6:31146910 POU5F1 C - 7 T vs. C - - >1 (-) 0 (-) >0.05
rs78716475 chr6:31208274 HLA-C [-28252bp] C - 10 T vs. C - 0.092 (T) <1 (-) 0 (-) >0.05
rs77338145 chr6:31208841 HLA-C [-27685bp] C - 10 A vs. G 0.025 (A) 0.092 (A) <1 (-) 0 (-) >0.05
rs79575717 chr6:31209193 HLA-C [-27333bp] C - 10 A vs. G - 0.108 (A) <1 (-) 0 (-) >0.05
rs28749547 chr6:31150350 POU5F1 [+1842bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs10947151 chr6:31180138 HCG27 [+8393bp] C - 12 C vs. G - - >1 (-) 57 (-) >0.05
rs143543919 chr6:31165507 HCG27 [-30bp] C - 12 T vs. G - - >1 (-) 1 (-) >0.05
rs6932396 chr6:31208360 HLA-C [-28166bp] C - 12 A vs. C 0.167 (C) - >1 (-) 0 (-) >0.05
rs79578955 chr6:31209035 HLA-C [-27491bp] C - 10 A vs. C - 0.1 (C) >1 (-) 0 (-) >0.05
rs73405036 chr6:31214171 HLA-C [-22355bp] C - 6 A vs. G 0.017 (A) - <1 (-) 0 (-) >0.05
rs114707980 chr6:31196850 HCG27 [+25105bp] C - 12 A vs. G 0.017 (A) - >1 (-) 0 (-) >0.05
rs78401918 chr6:31209151 HLA-C [-27375bp] C - 10 C vs. G - 0.1 (G) >1 (-) 0 (-) >0.05
rs116975314 chr6:31209541 HLA-C [-26985bp] C - 3 A vs. T - 0.058 (A) >1 (-) 0 (-) >0.05
rs114907333 chr6:31142097 POU5F1 C - 12 T vs. C - 0.017 (C) <1 (-) 0 (-) >0.05
rs74394074 chr6:31209068 HLA-C [-27458bp] C - 10 A vs. T 0.025 (A) 0.092 (A) <1 (-) 0 (-) >0.05
rs114401652 chr6:31149743 POU5F1 [+1235bp] C - 12 A vs. G 0.025 (G) 0.008 (G) <1 (-) 0 (-) >0.05
rs115919686 chr6:31142956 POU5F1 C - 12 T vs. C 0.025 (T) - >1 (-) 0 (-) >0.05
rs6937752 chr6:31148606 POU5F1 [+98bp] C - 12 T vs. C 0.308 (T) 0.483 (C) >1 (-) 0 (-) >0.05
rs2894184 chr6:31202577 HCG27 [+30832bp] C - 12 A vs. G 0.025 (A) - >1 (-) 0 (-) >0.05
rs3871246 chr6:31145431 POU5F1 C - 12 T vs. C 0.308 (C) 0.483 (T) <1 (-) 0 (-) >0.05
rs114216136 chr6:31142293 POU5F1 C - 12 T vs. C 0.017 (T) 0.017 (T) >1 (-) 0 (-) >0.05
rs73728462 chr6:31219850 HLA-C [-16676bp] C - 5 C vs. G - - >1 (-) 53 (-) >0.05
rs9263928 chr6:31178324 HCG27 [+6579bp] C - 12 T vs. G 0.442 (T) 0.425 (G) >1 (-) 0 (-) >0.05
rs9263929 chr6:31178328 HCG27 [+6583bp] C - 12 A vs. G 0.442 (G) 0.425 (A) <1 (-) 0 (-) >0.05
rs35016370 chr6:31177034 HCG27 [+5289bp] C - 12 A vs. G 0.233 (A) 0.325 (A) >1 (-) 56 (-) >0.05
rs115331068 chr6:31149746 POU5F1 [+1238bp] C - 12 A vs. G 0.025 (G) 0.008 (G) <1 (-) 0 (-) >0.05
rs116669563 chr6:31198515 HCG27 [+26770bp] C - 12 A vs. G 0.025 (A) - >1 (-) 0 (-) >0.05
rs115391134 chr6:31119497 CCHCR1 C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs17191082 chr6:31154507 POU5F1 [+5999bp] C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs2394887 chr6:31194711 HCG27 [+22966bp] C - 12 T vs. G 0.158 (T) 0.075 (T) <1 (-) 10 (-) >0.05
rs111423325 chr6:31208969 HLA-C [-27557bp] C - 10 A vs. T 0.025 (A) 0.092 (A) <1 (-) 0 (-) >0.05
rs41257954 chr6:31138310 POU5F1 C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs9263967 chr6:31186245 HCG27 [+14500bp] C - 12 A vs. G 0.475 (A) 0.45 (G) <1 (-) 0 (-) >0.05
rs143732531 chr6:31161673 HCG27 [-3864bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs115036790 chr6:31161472 HCG27 [-4065bp] C - 12 A vs. G 0.025 (A) - >1 (-) 0 (-) >0.05
rs115741140 chr6:31142417 POU5F1 C - 6 T vs. C - - <1 (-) 36 (-) >0.05
rs9500877 chr6:31159236 HCG27 [-6301bp] C - 12 T vs. C - - <1 (-) 32 (-) >0.05
rs145012831 chr6:31187330 HCG27 [+15585bp] C - 10 A vs. G - - <1 (-) 0 (-) >0.05
rs114787895 chr6:31161247 HCG27 [-4290bp] C - 12 T vs. C 0.025 (C) 0.017 (C) <1 (-) 0 (-) >0.05
rs36091469 chr6:31176860 HCG27 [+5115bp] C - 12 A vs. G 0.233 (G) 0.317 (G) <1 (-) 56 (-) >0.05
rs6935662 chr6:31160689 HCG27 [-4848bp] C - 12 A vs. C - - >1 (-) 0 (-) >0.05

Association studies for this region [+]