HCG27, chr6:31165537-31171745 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6930643 chr6:31174035 HCG27 [+2290bp] All: C 103,235 14 C vs. T - - 0.92 (0.89-0.95) 19 (0-56) 1.23e-06
Meta_image?name=rs6930643

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9264077 chr6:31200838 HCG27 [+29093bp] C - 12 A vs. G 0.183 (A) 0.108 (A) >1 (-) 0 (-) >0.05
rs9501521 chr6:31177740 HCG27 [+5995bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs112815193 chr6:31196390 HCG27 [+24645bp] C - 12 A vs. G 0.158 (A) 0.125 (A) <1 (-) 12 (-) >0.05
rs139652619 chr6:31164810 HCG27 [-727bp] C - 10 T vs. C - - >1 (-) 26 (-) >0.05
rs3869118 chr6:31206136 HLA-C [-30390bp] C - 12 C vs. G 0.158 (C) - <1 (-) 15 (-) >0.05
rs9264082 chr6:31201514 HCG27 [+29769bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs1793892 chr6:31221351 HLA-C [-15175bp] C - 4 T vs. C 0.133 (C) - <1 (-) 29 (-) >0.05
rs720465 chr6:31125777 CCHCR1 C - 12 A vs. C 0.3 (A) 0.075 (A) >1 (-) 0 (-) >0.05
rs36045025 chr6:31178943 HCG27 [+7198bp] C - 12 T vs. C 0.233 (T) 0.325 (T) >1 (-) 53 (-) >0.05
rs34480332 chr6:31178949 HCG27 [+7204bp] C - 12 A vs. T 0.225 (T) 0.325 (T) <1 (-) 53 (-) >0.05
rs149276038 chr6:31190132 HCG27 [+18387bp] C - 12 A vs. G - - >1 (-) 14 (-) >0.05
rs57645524 chr6:31160773 HCG27 [-4764bp] C - 12 T vs. G - - >1 (-) 0 (-) >0.05
rs12664433 chr6:31200672 HCG27 [+28927bp] C - 12 A vs. G 0.158 (A) 0.075 (A) <1 (-) 14 (-) >0.05
rs130069 chr6:31116245 CCHCR1 C - 12 T vs. C 0.017 (T) - >1 (-) 0 (-) >0.05
rs116016810 chr6:31219125 HLA-C [-17401bp] C - 5 T vs. C - 0.058 (C) >1 (-) 0 (-) >0.05
rs77595907 chr6:31216055 HLA-C [-20471bp] C - 4 T vs. C 0.025 (C) 0.092 (C) >1 (-) 0 (-) >0.05
rs58783670 chr6:31219126 HLA-C [-17400bp] C - 5 A vs. G - 0.042 (A) <1 (-) 0 (-) >0.05
rs116563937 chr6:31203942 HCG27 [+32197bp] C - 5 A vs. G - - <1 (-) 0 (-) >0.05
rs1265155 chr6:31143694 POU5F1 C - 12 A vs. G 0.308 (A) 0.483 (G) >1 (-) 0 (-) >0.05
rs6929434 chr6:31127947 TCF19 C - 12 A vs. T 0.025 (A) - >1 (-) 0 (-) >0.05
rs113288104 chr6:31204402 HLA-C [-32124bp] C - 12 T vs. G - - <1 (-) 14 (-) >0.05
rs116623790 chr6:31120794 CCHCR1 C - 12 A vs. G 0.025 (A) - >1 (-) 0 (-) >0.05
rs16898861 chr6:31124491 CCHCR1 C - 12 T vs. C 0.017 (T) 0.017 (T) >1 (-) 0 (-) >0.05
rs17197080 chr6:31124211 CCHCR1 C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs114922326 chr6:31119207 CCHCR1 C - 12 T vs. C 0.025 (T) 0.017 (T) >1 (-) 0 (-) >0.05
rs72863879 chr6:31203352 HCG27 [+31607bp] C - 12 A vs. G 0.15 (A) 0.075 (A) <1 (-) 14 (-) >0.05
rs55783607 chr6:31202764 HCG27 [+31019bp] C - 12 T vs. C - - >1 (-) 14 (-) >0.05
rs9263940 chr6:31179492 HCG27 [+7747bp] C - 12 T vs. C 0.475 (C) 0.408 (T) <1 (-) 0 (-) >0.05
rs114344444 chr6:31203303 HCG27 [+31558bp] C - 5 A vs. G - - <1 (-) 0 (-) >0.05
rs115067599 chr6:31214471 HLA-C [-22055bp] C - 6 C vs. G 0.017 (C) 0.017 (C) <1 (-) 4 (-) >0.05
rs112758902 chr6:31201534 HCG27 [+29789bp] C - 12 T vs. C 0.158 (T) 0.05 (T) <1 (-) 14 (-) >0.05
rs3130439 chr6:31221023 HLA-C [-15503bp] C - 4 A vs. G 0.417 (G) 0.392 (A) <1 (-) 0 (-) >0.05
rs17197658 chr6:31178334 HCG27 [+6589bp] C - 12 A vs. G 0.233 (G) 0.308 (G) <1 (-) 55 (-) >0.05
rs9264087 chr6:31201736 HCG27 [+29991bp] C - 12 T vs. G 0.183 (G) 0.075 (G) <1 (-) 0 (-) >0.05
rs3868082 chr6:31207692 HLA-C [-28834bp] C - 12 A vs. G 0.467 (A) 0.483 (G) >1 (-) 0 (-) >0.05
rs114006078 chr6:31211473 HLA-C [-25053bp] C - 4 A vs. G 0.05 (A) 0.067 (A) <1 (-) 0 (-) >0.05
rs9263953 chr6:31181708 HCG27 [+9963bp] C - 12 T vs. C 0.45 (T) 0.442 (C) >1 (-) 0 (-) >0.05
rs114872306 chr6:31206081 HLA-C [-30445bp] C - 12 A vs. T 0.058 (T) 0.075 (T) <1 (-) 0 (-) >0.05
rs149518445 chr6:31201438 HCG27 [+29693bp] C - 5 T vs. C - - >1 (-) 0 (-) >0.05
rs62401299 chr6:31146722 POU5F1 C - 12 T vs. C 0.033 (C) 0.092 (C) <1 (-) 39 (-) >0.05
rs9263927 chr6:31178233 HCG27 [+6488bp] C - 12 T vs. C 0.45 (C) 0.45 (T) <1 (-) 0 (-) >0.05
rs3869125 chr6:31221447 HLA-C [-15079bp] C - 4 A vs. G 0.067 (G) 0.3 (G) >1 (-) 55 (-) >0.05
rs79527728 chr6:31140909 POU5F1 C - 12 T vs. G - 0.067 (G) >1 (-) 25 (-) >0.05
rs28361029 chr6:31220203 HLA-C [-16323bp] C - 5 A vs. G 0.1 (A) - >1 (-) 48 (-) >0.05
rs76465289 chr6:31134833 TCF19 C - 12 T vs. C 0.008 (T) 0.075 (T) >1 (-) 21 (-) >0.05
rs9391813 chr6:31145073 POU5F1 C - 12 T vs. C - - >1 (-) 12 (-) >0.05
rs1793900 chr6:31164723 HCG27 [-814bp] C - 12 C vs. G - - >1 (-) 0 (-) >0.05
rs76364340 chr6:31133982 TCF19 C - 12 T vs. C - 0.067 (T) >1 (-) 21 (-) >0.05
rs17191496 chr6:31221186 HLA-C [-15340bp] C - 5 A vs. T - - >1 (-) 52 (-) >0.05
rs1639113 chr6:31221503 HLA-C [-15023bp] C - 4 A vs. G 0.133 (A) 0.067 (A) >1 (-) 0 (-) >0.05

Association studies for this region [+]