HCG27, chr6:31165537-31171745 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6930643 chr6:31174035 HCG27 [+2290bp] All: C 103,235 14 C vs. T - - 0.92 (0.89-0.95) 19 (0-56) 1.23e-06
Meta_image?name=rs6930643

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs76259659 chr6:31215021 HLA-C [-21505bp] C - 6 A vs. G 0.025 (A) 0.075 (A) <1 (-) 0 (-) >0.05
rs17191517 chr6:31221349 HLA-C [-15177bp] C - 5 T vs. G - - >1 (-) 52 (-) >0.05
rs9263843 chr6:31154830 POU5F1 [+6322bp] C - 12 T vs. G - - >1 (-) 0 (-) >0.05
rs77626638 chr6:31211340 HLA-C [-25186bp] C - 7 T vs. C 0.025 (C) 0.1 (C) >1 (-) 0 (-) >0.05
rs113390008 chr6:31207351 HLA-C [-29175bp] C - 12 A vs. G 0.167 (A) - <1 (-) 19 (-) >0.05
rs28744244 chr6:31177776 HCG27 [+6031bp] C - 12 A vs. G - 0.2 (A) <1 (-) 0 (-) >0.05
rs139393221 chr6:31216974 HLA-C [-19552bp] C - 4 A vs. G - - <1 (-) 0 (-) >0.05
rs9263822 chr6:31144917 POU5F1 C - 12 C vs. G - - <1 (-) 0 (-) >0.05
rs9263944 chr6:31180423 HCG27 [+8678bp] C - 12 A vs. G 0.45 (A) 0.45 (G) >1 (-) 0 (-) >0.05
rs17191587 chr6:31221532 HLA-C [-14994bp] C - 5 T vs. C - - <1 (-) 52 (-) >0.05
rs28360997 chr6:31188654 HCG27 [+16909bp] C - 12 A vs. G 0.15 (A) 0.083 (A) <1 (-) 0 (-) >0.05
rs17197881 chr6:31221407 HLA-C [-15119bp] C - 5 T vs. C - - <1 (-) 52 (-) >0.05
rs28742577 chr6:31164409 HCG27 [-1128bp] C - 12 T vs. C 0.017 (T) 0.017 (T) >1 (-) 0 (-) >0.05
rs9501062 chr6:31131707 TCF19 C - 12 T vs. C 0.033 (C) 0.183 (C) <1 (-) 41 (-) >0.05
rs73728471 chr6:31221717 HLA-C [-14809bp] C - 5 T vs. C - - <1 (-) 52 (-) >0.05
rs114475699 chr6:31211201 HLA-C [-25325bp] C - 11 T vs. C 0.158 (C) 0.1 (C) <1 (-) 7 (-) >0.05
rs7757622 chr6:31200764 HCG27 [+29019bp] C - 12 T vs. C 0.467 (C) 0.325 (T) >1 (-) 0 (-) >0.05
rs35739787 chr6:31176980 HCG27 [+5235bp] C - 12 A vs. C 0.233 (A) 0.267 (A) >1 (-) 49 (-) >0.05
rs9263833 chr6:31152562 POU5F1 [+4054bp] C - 12 T vs. C - - >1 (-) 25 (-) >0.05
rs17197965 chr6:31221591 HLA-C [-14935bp] C - 4 A vs. T - - <1 (-) 64 (-) >0.05
rs17197951 chr6:31221586 HLA-C [-14940bp] C - 4 T vs. C - - >1 (-) 64 (-) >0.05
rs9263825 chr6:31147515 POU5F1 C - 12 A vs. G - - <1 (-) 26 (-) >0.05
rs4997405 chr6:31193211 HCG27 [+21466bp] C - 12 T vs. C 0.442 (C) 0.475 (T) <1 (-) 0 (-) >0.05
rs9501509 chr6:31163632 HCG27 [-1905bp] C - 12 A vs. G 0.15 (A) 0.092 (A) >1 (-) 33 (-) >0.05
rs73407034 chr6:31221628 HLA-C [-14898bp] C - 4 A vs. G - - <1 (-) 64 (-) >0.05
rs9263838 chr6:31153872 POU5F1 [+5364bp] C - 12 T vs. C 0.175 (T) 0.025 (T) <1 (-) 25 (-) >0.05
rs59044818 chr6:31119310 CCHCR1 C - 12 T vs. C - 0.183 (T) >1 (-) 43 (-) >0.05
rs148022859 chr6:31161594 HCG27 [-3943bp] C - 3 C vs. G - - >1 (-) 72 (-) >0.05
rs4457201 chr6:31177372 HCG27 [+5627bp] C - 12 T vs. C 0.45 (T) 0.425 (C) >1 (-) 0 (-) >0.05
rs9404937 chr6:31144637 POU5F1 C - 12 A vs. G - - >1 (-) 24 (-) >0.05
rs148285362 chr6:31185500 HCG27 [+13755bp] C - 3 T vs. G - - >1 (-) 0 (-) >0.05
rs60483630 chr6:31119351 CCHCR1 C - 12 A vs. G 0.033 (A) 0.183 (A) >1 (-) 43 (-) >0.05
rs9263980 chr6:31188397 HCG27 [+16652bp] C - 12 A vs. G 0.45 (A) 0.45 (G) >1 (-) 0 (-) >0.05
rs6909939 chr6:31140518 POU5F1 C - 12 A vs. G 0.175 (A) 0.142 (A) <1 (-) 21 (-) >0.05
rs9263978 chr6:31187568 HCG27 [+15823bp] C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs7760698 chr6:31150225 POU5F1 [+1717bp] C - 11 A vs. T 0.017 (A) 0.025 (A) >1 (-) 2 (-) >0.05
rs77171432 chr6:31217591 HLA-C [-18935bp] C - 4 T vs. C 0.025 (C) 0.092 (C) <1 (-) 0 (-) >0.05
rs9391816 chr6:31145123 POU5F1 C - 12 A vs. G 0.308 (G) 0.483 (A) <1 (-) 24 (-) >0.05
rs80353391 chr6:31213644 HLA-C [-22882bp] C - 7 A vs. C 0.025 (A) - <1 (-) 0 (-) >0.05
rs77181030 chr6:31216139 HLA-C [-20387bp] C - 4 A vs. G 0.017 (A) 0.092 (A) <1 (-) 0 (-) >0.05
rs28744283 chr6:31217622 HLA-C [-18904bp] C - 5 A vs. G 0.117 (A) - >1 (-) 44 (-) >0.05
rs885949 chr6:31140220 POU5F1 C - 12 T vs. C 0.1 (C) 0.225 (C) <1 (-) 0 (-) >0.05
rs114198627 chr6:31195009 HCG27 [+23264bp] C - 3 A vs. G 0.017 (A) - >1 (-) 0 (-) >0.05
rs9263933 chr6:31178626 HCG27 [+6881bp] C - 12 A vs. G - 0.442 (G) >1 (-) 0 (-) >0.05
rs6913074 chr6:31151751 POU5F1 [+3243bp] C - 12 T vs. C 0.175 (T) - <1 (-) 33 (-) >0.05
rs112030670 chr6:31209380 HLA-C [-27146bp] C - 12 A vs. G - - >1 (-) 13 (-) >0.05
rs6910473 chr6:31140808 POU5F1 C - 12 A vs. G 0.175 (A) 0.042 (A) <1 (-) 23 (-) >0.05
rs9263936 chr6:31179159 HCG27 [+7414bp] C - 12 A vs. C 0.45 (A) 0.45 (C) >1 (-) 0 (-) >0.05
rs116371977 chr6:31140068 POU5F1 C - 12 T vs. C 0.017 (T) - <1 (-) 0 (-) >0.05
rs9263832 chr6:31152541 POU5F1 [+4033bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05

Association studies for this region [+]