HLA-C, chr6:31236526-31239907 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2853923 chr6:31265737 HLA-C [+25830bp] All: C 103,235 14 A vs. G 0.492 (A) 0.442 (A) 1.07 (1.04-1.11) 0 (0-47) 9.90e-06
Meta_image?name=rs2853923

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2394895 chr6:31206979 HLA-C [-29547bp] C - 12 T vs. C 0.225 (C) 0.175 (C) >1 (-) 0 (-) <0.05
rs28367672 chr6:31269113 HLA-C [+29206bp] C - 12 C vs. G 0.292 (G) 0.342 (G) >1 (-) 0 (-) <0.05
rs3134781 chr6:31198067 HCG27 [+26322bp] C - 12 A vs. G - - <1 (-) 0 (-) <0.05
rs35193884 chr6:31249611 HLA-C [+9704bp] C - 11 A vs. G - - <1 (-) 26 (-) <0.05
rs28367674 chr6:31269223 HLA-C [+29316bp] C - 12 A vs. T 0.292 (T) 0.342 (T) >1 (-) 0 (-) <0.05
rs35840219 chr6:31249267 HLA-C [+9360bp] C - 11 C vs. G 0.067 (C) - <1 (-) 28 (-) <0.05
rs3906276 chr6:31261084 HLA-C [+21177bp] C - 12 A vs. T 0.292 (A) 0.35 (A) <1 (-) 0 (-) <0.05
rs1634754 chr6:31278398 HLA-C [+38491bp] C - 8 T vs. C 0.5 (C) 0.342 (C) <1 (-) 49 (-) <0.05
rs28367675 chr6:31269260 HLA-C [+29353bp] C - 12 C vs. G 0.292 (G) 0.342 (G) >1 (-) 0 (-) <0.05
rs2394894 chr6:31206920 HLA-C [-29606bp] C - 12 T vs. C 0.225 (C) 0.175 (C) >1 (-) 0 (-) <0.05
rs73728460 chr6:31219613 HLA-C [-16913bp] C - 3 T vs. C - 0.075 (T) >1 (-) 58 (-) <0.05
rs79433986 chr6:31219635 HLA-C [-16891bp] C - 3 A vs. G - - >1 (-) 58 (-) <0.05
rs77078553 chr6:31271137 HLA-C [+31230bp] C - 11 C vs. G 0.075 (C) 0.267 (C) <1 (-) 15 (-) <0.05
rs7770635 chr6:31271135 HLA-C [+31228bp] C - 11 A vs. T 0.075 (A) 0.267 (A) <1 (-) 15 (-) <0.05
rs28367676 chr6:31269262 HLA-C [+29355bp] C - 12 A vs. C 0.292 (A) 0.342 (A) <1 (-) 0 (-) <0.05
rs9468938 chr6:31270154 HLA-C [+30247bp] C - 12 C vs. G 0.267 (G) 0.35 (G) >1 (-) 0 (-) <0.05
rs7750695 chr6:31271141 HLA-C [+31234bp] C - 11 A vs. G 0.075 (A) 0.267 (A) <1 (-) 15 (-) <0.05
rs28367609 chr6:31267024 HLA-C [+27117bp] C - 12 C vs. G 0.25 (C) - <1 (-) 0 (-) <0.05
rs28367680 chr6:31269330 HLA-C [+29423bp] C - 12 C vs. G 0.292 (G) 0.342 (G) >1 (-) 0 (-) <0.05
rs28367679 chr6:31269325 HLA-C [+29418bp] C - 12 T vs. G 0.292 (T) 0.342 (T) <1 (-) 0 (-) <0.05
rs1130580 chr6:31236679 HLA-C C - 3 T vs. C 0.3 (C) 0.308 (T) >1 (-) 44 (-) <0.05
rs28367610 chr6:31267031 HLA-C [+27124bp] C - 12 A vs. T 0.2 (A) 0.192 (A) <1 (-) 0 (-) <0.05
rs3134784 chr6:31196935 HCG27 [+25190bp] C - 12 A vs. G - - <1 (-) 0 (-) <0.05
rs3130946 chr6:31196197 HCG27 [+24452bp] C - 12 T vs. C 0.25 (T) 0.242 (T) <1 (-) 0 (-) <0.05
rs5009853 chr6:31240636 HLA-C [+729bp] C - 9 T vs. C - 0.042 (T) >1 (-) 46 (-) <0.05
rs115573554 chr6:31240146 HLA-C [+239bp] C - 9 A vs. T - 0.025 (T) <1 (-) 46 (-) <0.05
rs9468942 chr6:31274441 HLA-C [+34534bp] C - 3 A vs. G - 0.017 (A) >1 (-) 0 (-) <0.05
rs3130473 chr6:31199208 HCG27 [+27463bp] C - 11 T vs. C 0.25 (T) 0.275 (T) <1 (-) 0 (-) <0.05
rs9264983 chr6:31281231 HLA-B [-40418bp] C - 4 A vs. G 0.258 (A) 0.2 (A) >1 (-) 23 (-) <0.05
rs76703505 chr6:31274666 HLA-C [+34759bp] C - 11 T vs. C 0.067 (T) 0.358 (T) <1 (-) 9 (-) <0.05
rs2894358 chr6:31269436 HLA-C [+29529bp] C - 12 A vs. T 0.267 (A) 0.333 (A) <1 (-) 0 (-) <0.05
rs17198888 chr6:31266015 HLA-C [+26108bp] C - 12 A vs. G 0.192 (G) 0.3 (G) >1 (-) 18 (-) <0.05
rs7746336 chr6:31270987 HLA-C [+31080bp] C - 12 T vs. C 0.075 (T) 0.267 (T) <1 (-) 9 (-) <0.05
rs2844616 chr6:31242639 HLA-C [+2732bp] C - 12 T vs. C 0.417 (C) 0.35 (T) >1 (-) 0 (-) <0.05
rs4335019 chr6:31275560 HLA-C [+35653bp] C - 11 T vs. C 0.075 (C) 0.35 (C) >1 (-) 19 (-) <0.05
rs9394048 chr6:31243862 HLA-C [+3955bp] C - 12 T vs. G 0.042 (T) 0.242 (T) <1 (-) 37 (-) <0.05
rs6941926 chr6:31281229 HLA-B [-40420bp] C - 6 C vs. G 0.05 (G) - <1 (-) 0 (-) <0.05
rs7760988 chr6:31273030 HLA-C [+33123bp] C - 11 T vs. C 0.075 (T) 0.267 (T) <1 (-) 15 (-) <0.05
rs6926927 chr6:31273992 HLA-C [+34085bp] C - 11 A vs. G 0.075 (A) 0.267 (A) <1 (-) 15 (-) <0.05
rs9394056 chr6:31273333 HLA-C [+33426bp] C - 11 A vs. G 0.075 (G) 0.267 (G) >1 (-) 16 (-) <0.05
rs9368679 chr6:31272729 HLA-C [+32822bp] C - 11 T vs. C 0.075 (T) 0.267 (T) <1 (-) 16 (-) <0.05
rs9357125 chr6:31273578 HLA-C [+33671bp] C - 11 T vs. C 0.075 (T) 0.267 (T) <1 (-) 15 (-) <0.05
rs9368680 chr6:31272844 HLA-C [+32937bp] C - 11 C vs. G 0.075 (C) 0.267 (C) <1 (-) 16 (-) <0.05
rs6930944 chr6:31274036 HLA-C [+34129bp] C - 11 A vs. G 0.075 (G) 0.267 (G) >1 (-) 14 (-) <0.05
rs9368678 chr6:31272463 HLA-C [+32556bp] C - 11 T vs. C 0.075 (C) 0.267 (C) >1 (-) 16 (-) <0.05
rs9368674 chr6:31271758 HLA-C [+31851bp] C - 11 A vs. G 0.075 (A) 0.267 (A) <1 (-) 16 (-) <0.05
rs9368673 chr6:31271757 HLA-C [+31850bp] C - 11 T vs. C 0.075 (C) 0.267 (C) >1 (-) 16 (-) <0.05
rs6918048 chr6:31268429 HLA-C [+28522bp] C - 11 T vs. C - 0.15 (C) >1 (-) 0 (-) <0.05
rs9368672 chr6:31269729 HLA-C [+29822bp] C - 11 A vs. T - 0.158 (T) >1 (-) 0 (-) <0.05
rs9264569 chr6:31235412 HLA-C [-1114bp] C - 7 T vs. C 0.258 (T) 0.225 (T) >1 (-) 38 (-) <0.05

Association studies for this region [+]