HLA-C, chr6:31236526-31239907 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2853923 chr6:31265737 HLA-C [+25830bp] All: C 103,235 14 A vs. G 0.492 (A) 0.442 (A) 1.07 (1.04-1.11) 0 (0-47) 9.90e-06
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs28397294 chr6:31205043 HLA-C [-31483bp] C - 12 A vs. T 0.175 (T) 0.233 (T) >1 (-) 27 (-) >0.05
rs7745906 chr6:31204008 HCG27 [+32263bp] C - 12 A vs. G 0.175 (A) 0.233 (A) <1 (-) 27 (-) >0.05
rs9468940 chr6:31271680 HLA-C [+31773bp] C - 12 C vs. G 0.258 (C) 0.258 (C) <1 (-) 0 (-) >0.05
rs35446580 chr6:31250796 HLA-C [+10889bp] C - 12 T vs. C 0.108 (C) 0.1 (C) >1 (-) 19 (-) >0.05
rs28397300 chr6:31209301 HLA-C [-27225bp] C - 12 T vs. C - - >1 (-) 26 (-) >0.05
rs6908511 chr6:31204432 HLA-C [-32094bp] C - 12 T vs. C - - <1 (-) 23 (-) >0.05
rs17198616 chr6:31247964 HLA-C [+8057bp] C - 12 T vs. C 0.125 (C) 0.208 (C) >1 (-) 17 (-) >0.05
rs3130685 chr6:31206206 HLA-C [-30320bp] C - 12 T vs. C 0.433 (T) 0.483 (C) <1 (-) 0 (-) >0.05
rs6457349 chr6:31203886 HCG27 [+32141bp] C - 12 A vs. T 0.175 (T) 0.225 (T) >1 (-) 27 (-) >0.05
rs35438642 chr6:31247439 HLA-C [+7532bp] C - 12 C vs. G 0.125 (G) 0.242 (G) >1 (-) 16 (-) >0.05
rs34950876 chr6:31247416 HLA-C [+7509bp] C - 12 T vs. G 0.125 (G) 0.25 (G) >1 (-) 16 (-) >0.05
rs9366779 chr6:31273691 HLA-C [+33784bp] C - 11 T vs. C 0.075 (T) 0.267 (T) <1 (-) 16 (-) >0.05
rs3134783 chr6:31197263 HCG27 [+25518bp] C - 12 A vs. G 0.25 (A) 0.367 (A) <1 (-) 0 (-) >0.05
rs118169956 chr6:31274630 HLA-C [+34723bp] C - 10 A vs. G - 0.175 (A) <1 (-) 0 (-) >0.05
rs3189472 chr6:31236599 HLA-C C - 3 C vs. G - - <1 (-) 14 (-) >0.05
rs3132532 chr6:31201202 HCG27 [+29457bp] C - 12 A vs. G - - >1 (-) 48 (-) >0.05
rs7383157 chr6:31239306 HLA-C C - 3 T vs. G 0.2 (T) 0.208 (T) >1 (-) 0 (-) >0.05
rs1130538 chr6:31236622 HLA-C C - 3 A vs. C 0.4 (C) 0.25 (C) <1 (-) 15 (-) >0.05
rs9380226 chr6:31216746 HLA-C [-19780bp] C - 4 A vs. G - 0.117 (G) >1 (-) 41 (-) >0.05
rs34090104 chr6:31241353 HLA-C [+1446bp] C - 12 T vs. G 0.142 (T) 0.242 (T) <1 (-) 18 (-) >0.05
rs34255701 chr6:31241600 HLA-C [+1693bp] C - 12 A vs. G 0.125 (A) 0.233 (A) <1 (-) 17 (-) >0.05
rs9357117 chr6:31217504 HLA-C [-19022bp] C - 4 A vs. G - 0.125 (G) >1 (-) 41 (-) >0.05
rs113997511 chr6:31274070 HLA-C [+34163bp] C - 11 A vs. G 0.008 (A) 0.092 (A) >1 (-) 20 (-) >0.05
rs3130469 chr6:31196336 HCG27 [+24591bp] C - 12 A vs. T 0.35 (T) 0.258 (T) <1 (-) 48 (-) >0.05
rs3130947 chr6:31195365 HCG27 [+23620bp] C - 12 T vs. G 0.333 (G) 0.258 (G) <1 (-) 48 (-) >0.05
rs28367698 chr6:31284291 HLA-B [-37358bp] C - 3 C vs. G - - >1 (-) 0 (-) >0.05
rs12663108 chr6:31269555 HLA-C [+29648bp] C - 11 A vs. C - 0.108 (A) >1 (-) 18 (-) >0.05
rs117493007 chr6:31269872 HLA-C [+29965bp] C - 11 A vs. G - 0.092 (G) <1 (-) 18 (-) >0.05
rs35734933 chr6:31257247 HLA-C [+17340bp] C - 12 T vs. G 0.125 (G) 0.167 (G) >1 (-) 13 (-) >0.05
rs16899241 chr6:31273703 HLA-C [+33796bp] C - 11 T vs. C 0.025 (T) 0.1 (T) >1 (-) 20 (-) >0.05
rs2394891 chr6:31205233 HLA-C [-31293bp] C - 12 A vs. G 0.4 (A) 0.483 (A) <1 (-) 0 (-) >0.05
rs60082426 chr6:31270981 HLA-C [+31074bp] C - 11 C vs. G 0.033 (C) 0.1 (C) >1 (-) 19 (-) >0.05
rs3130939 chr6:31198507 HCG27 [+26762bp] C - 12 A vs. G 0.333 (A) 0.258 (A) >1 (-) 48 (-) >0.05
rs116988439 chr6:31208256 HLA-C [-28270bp] C - 3 T vs. C - 0.067 (T) >1 (-) 40 (-) >0.05
rs34401425 chr6:31241916 HLA-C [+2009bp] C - 12 T vs. C 0.133 (C) - >1 (-) 18 (-) >0.05
rs56193391 chr6:31250070 HLA-C [+10163bp] C - 11 T vs. C 0.033 (T) 0.042 (T) >1 (-) 35 (-) >0.05
rs12662484 chr6:31250071 HLA-C [+10164bp] C - 11 A vs. G 0.033 (G) 0.042 (G) <1 (-) 35 (-) >0.05
rs12664384 chr6:31272892 HLA-C [+32985bp] C - 11 T vs. C 0.033 (T) 0.1 (T) >1 (-) 21 (-) >0.05
rs34196875 chr6:31275603 HLA-C [+35696bp] C - 11 C vs. G 0.125 (C) 0.167 (C) <1 (-) 8 (-) >0.05
rs114000349 chr6:31273540 HLA-C [+33633bp] C - 11 T vs. C 0.025 (T) 0.1 (T) >1 (-) 21 (-) >0.05
rs17192274 chr6:31248033 HLA-C [+8126bp] C - 12 A vs. G - - >1 (-) 18 (-) >0.05
rs2524080 chr6:31242089 HLA-C [+2182bp] C - 12 A vs. T 0.425 (A) 0.208 (A) >1 (-) 0 (-) >0.05
rs3130519 chr6:31195097 HCG27 [+23352bp] C - 12 T vs. C 0.333 (T) 0.267 (T) >1 (-) 49 (-) >0.05
rs62396277 chr6:31247688 HLA-C [+7781bp] C - 6 A vs. G - - >1 (-) 41 (-) >0.05
rs3869123 chr6:31209836 HLA-C [-26690bp] C - 3 A vs. G - 0.067 (G) <1 (-) 41 (-) >0.05
rs2894185 chr6:31204447 HLA-C [-32079bp] C - 12 T vs. G - - >1 (-) 0 (-) >0.05
rs3130527 chr6:31198987 HCG27 [+27242bp] C - 12 T vs. C 0.333 (T) 0.367 (T) >1 (-) 48 (-) >0.05
rs9264597 chr6:31237233 HLA-C C - 3 A vs. G 0.408 (A) 0.267 (A) >1 (-) 28 (-) >0.05
rs7454526 chr6:31240884 HLA-C [+977bp] C - 11 A vs. G 0.033 (G) 0.033 (G) <1 (-) 39 (-) >0.05
rs2844607 chr6:31247441 HLA-C [+7534bp] C - 12 T vs. C 0.275 (T) 0.308 (T) <1 (-) 0 (-) >0.05

Association studies for this region [+]