HLA-C, chr6:31236526-31239907 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2853923 chr6:31265737 HLA-C [+25830bp] All: C 103,235 14 A vs. G 0.492 (A) 0.442 (A) 1.07 (1.04-1.11) 0 (0-47) 9.90e-06
Meta_image?name=rs2853923

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs115867506 chr6:31257755 HLA-C [+17848bp] C - 12 A vs. C 0.033 (A) 0.1 (A) >1 (-) 23 (-) >0.05
rs114773928 chr6:31257888 HLA-C [+17981bp] C - 12 A vs. T 0.033 (G) 0.1 (T) <1 (-) 23 (-) >0.05
rs116095150 chr6:31257549 HLA-C [+17642bp] C - 12 T vs. C 0.033 (C) 0.108 (C) <1 (-) 23 (-) >0.05
rs114047638 chr6:31257666 HLA-C [+17759bp] C - 12 A vs. C 0.033 (C) 0.1 (C) <1 (-) 23 (-) >0.05
rs114102497 chr6:31267421 HLA-C [+27514bp] C - 12 T vs. C 0.033 (C) 0.1 (C) <1 (-) 15 (-) >0.05
rs115328172 chr6:31257858 HLA-C [+17951bp] C - 12 T vs. C 0.033 (T) 0.1 (T) >1 (-) 23 (-) >0.05
rs116422780 chr6:31257732 HLA-C [+17825bp] C - 12 T vs. C 0.033 (C) 0.1 (C) <1 (-) 23 (-) >0.05
rs117468183 chr6:31257993 HLA-C [+18086bp] C - 12 A vs. T - 0.1 (A) >1 (-) 23 (-) >0.05
rs16899166 chr6:31258096 HLA-C [+18189bp] C - 12 T vs. C 0.033 (T) 0.075 (T) >1 (-) 23 (-) >0.05
rs114393491 chr6:31258570 HLA-C [+18663bp] C - 12 T vs. G 0.008 (T) 0.1 (T) >1 (-) 23 (-) >0.05
rs9264544 chr6:31234678 HLA-C [-1848bp] C - 5 A vs. G 0.45 (G) 0.417 (G) <1 (-) 0 (-) >0.05
rs2394897 chr6:31213502 HLA-C [-23024bp] C - 11 A vs. G 0.192 (A) 0.092 (A) >1 (-) 4 (-) >0.05
rs34768512 chr6:31283700 HLA-B [-37949bp] C - 5 A vs. G 0.133 (A) 0.208 (A) <1 (-) 26 (-) >0.05
rs7764413 chr6:31242082 HLA-C [+2175bp] C - 12 T vs. C 0.358 (C) 0.35 (T) >1 (-) 4 (-) >0.05
rs114635914 chr6:31267075 HLA-C [+27168bp] C - 12 T vs. C 0.033 (T) - >1 (-) 16 (-) >0.05
rs2524060 chr6:31267422 HLA-C [+27515bp] C - 12 A vs. C 0.342 (A) 0.208 (A) >1 (-) 0 (-) >0.05
rs7745197 chr6:31203766 HCG27 [+32021bp] C - 12 T vs. C 0.175 (T) - <1 (-) 0 (-) >0.05
rs77530144 chr6:31275657 HLA-C [+35750bp] C - 11 T vs. C - 0.108 (C) <1 (-) 21 (-) >0.05
rs2246954 chr6:31265262 HLA-C [+25355bp] C - 12 A vs. G 0.492 (A) 0.4 (A) >1 (-) 0 (-) >0.05
rs117207641 chr6:31267039 HLA-C [+27132bp] C - 12 T vs. C - 0.108 (T) >1 (-) 16 (-) >0.05
rs2524098 chr6:31236316 HLA-C [-210bp] C - 4 T vs. G 0.4 (G) 0.225 (G) <1 (-) 52 (-) >0.05
rs78514002 chr6:31266006 HLA-C [+26099bp] C - 10 A vs. G 0.017 (G) 0.083 (G) >1 (-) 0 (-) >0.05
rs1793895 chr6:31192192 HCG27 [+20447bp] C - 12 T vs. G - - <1 (-) 0 (-) >0.05
rs147109807 chr6:31284353 HLA-B [-37296bp] C - 3 A vs. G - - <1 (-) 0 (-) >0.05
rs2247056 chr6:31265490 HLA-C [+25583bp] C - 12 T vs. C 0.342 (T) 0.208 (T) >1 (-) 0 (-) >0.05
rs9264969 chr6:31278415 HLA-C [+38508bp] C - 10 T vs. C 0.3 (T) 0.45 (C) >1 (-) 22 (-) >0.05
rs116704042 chr6:31275511 HLA-C [+35604bp] C - 11 A vs. T - 0.075 (A) >1 (-) 20 (-) >0.05
rs1639110 chr6:31191636 HCG27 [+19891bp] C - 12 A vs. G 0.183 (A) - <1 (-) 0 (-) >0.05
rs115864648 chr6:31258410 HLA-C [+18503bp] C - 12 A vs. T 0.025 (T) 0.083 (T) <1 (-) 21 (-) >0.05
rs116741676 chr6:31258357 HLA-C [+18450bp] C - 12 A vs. G 0.008 (G) 0.083 (G) <1 (-) 21 (-) >0.05
rs117201909 chr6:31258367 HLA-C [+18460bp] C - 12 A vs. G - 0.1 (A) >1 (-) 21 (-) >0.05
rs77457299 chr6:31270716 HLA-C [+30809bp] C - 8 A vs. G - - >1 (-) 0 (-) >0.05
rs116507979 chr6:31258413 HLA-C [+18506bp] C - 12 T vs. G 0.025 (G) 0.092 (G) <1 (-) 21 (-) >0.05
rs76884631 chr6:31275910 HLA-C [+36003bp] C - 11 T vs. C 0.05 (T) 0.175 (T) <1 (-) 10 (-) >0.05
rs3130424 chr6:31218239 HLA-C [-18287bp] C - 10 A vs. C 0.225 (C) 0.167 (C) >1 (-) 0 (-) >0.05
rs2524054 chr6:31252396 HLA-C [+12489bp] C - 12 A vs. C 0.342 (A) 0.208 (A) >1 (-) 0 (-) >0.05
rs34023488 chr6:31270295 HLA-C [+30388bp] C - 11 T vs. C 0.117 (T) 0.167 (T) <1 (-) 16 (-) >0.05
rs36004907 chr6:31281491 HLA-B [-40158bp] C - 6 T vs. G 0.125 (T) 0.15 (T) <1 (-) 13 (-) >0.05
rs2853928 chr6:31257511 HLA-C [+17604bp] C - 12 A vs. C 0.35 (A) 0.192 (A) >1 (-) 0 (-) >0.05
rs140835803 chr6:31222518 HLA-C [-14008bp] C - 3 C vs. G - - >1 (-) 0 (-) >0.05
rs2524139 chr6:31264133 HLA-C [+24226bp] C - 12 C vs. G 0.342 (G) 0.208 (G) <1 (-) 0 (-) >0.05
rs56761367 chr6:31282629 HLA-B [-39020bp] C - 4 T vs. C 0.017 (T) - >1 (-) 0 (-) >0.05
rs2524129 chr6:31265135 HLA-C [+25228bp] C - 12 C vs. G 0.342 (C) 0.208 (C) >1 (-) 0 (-) >0.05
rs56006638 chr6:31282934 HLA-B [-38715bp] C - 4 A vs. G 0.05 (G) - <1 (-) 0 (-) >0.05
rs12665531 chr6:31215916 HLA-C [-20610bp] C - 9 A vs. G 0.192 (A) 0.067 (A) >1 (-) 0 (-) >0.05
rs2894204 chr6:31237061 HLA-C C - 3 T vs. C 0.4 (C) 0.3 (C) <1 (-) 0 (-) >0.05
rs9263982 chr6:31189985 HCG27 [+18240bp] C - 12 A vs. G - - >1 (-) 11 (-) >0.05
rs111411820 chr6:31207589 HLA-C [-28937bp] C - 12 A vs. C 0.192 (A) 0.083 (A) >1 (-) 15 (-) >0.05
rs3899471 chr6:31215037 HLA-C [-21489bp] C - 9 T vs. C 0.192 (C) 0.083 (C) <1 (-) 0 (-) >0.05
rs2524142 chr6:31263522 HLA-C [+23615bp] C - 12 C vs. G 0.35 (C) 0.208 (C) >1 (-) 0 (-) >0.05

Association studies for this region [+]