HLA-C, chr6:31236526-31239907 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2853923 chr6:31265737 HLA-C [+25830bp] All: C 103,235 14 A vs. G 0.492 (A) 0.442 (A) 1.07 (1.04-1.11) 0 (0-47) 9.90e-06
Meta_image?name=rs2853923

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2524143 chr6:31263510 HLA-C [+23603bp] C - 12 T vs. C 0.35 (T) 0.217 (T) >1 (-) 0 (-) >0.05
rs2853944 chr6:31247758 HLA-C [+7851bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs2001181 chr6:31236998 HLA-C C - 3 T vs. C 0.2 (C) 0.233 (C) <1 (-) 2 (-) >0.05
rs2394904 chr6:31216105 HLA-C [-20421bp] C - 9 A vs. G 0.175 (A) 0.083 (A) >1 (-) 0 (-) >0.05
rs2524167 chr6:31284136 HLA-B [-37513bp] C - 4 T vs. C 0.467 (T) 0.383 (C) >1 (-) 62 (-) >0.05
rs9348859 chr6:31249977 HLA-C [+10070bp] C - 12 T vs. C 0.308 (T) 0.425 (C) <1 (-) 0 (-) >0.05
rs17198853 chr6:31265866 HLA-C [+25959bp] C - 12 A vs. G 0.033 (A) 0.1 (A) >1 (-) 15 (-) >0.05
rs9380235 chr6:31248886 HLA-C [+8979bp] C - 12 T vs. C 0.083 (T) 0.242 (T) <1 (-) 22 (-) >0.05
rs17191405 chr6:31221014 HLA-C [-15512bp] C - 4 A vs. C - - >1 (-) 0 (-) >0.05
rs17192463 chr6:31265565 HLA-C [+25658bp] C - 12 T vs. C 0.033 (T) 0.1 (T) >1 (-) 15 (-) >0.05
rs9263979 chr6:31188267 HCG27 [+16522bp] C - 12 T vs. C 0.208 (T) 0.1 (T) >1 (-) 25 (-) >0.05
rs17192484 chr6:31265759 HLA-C [+25852bp] C - 12 T vs. C 0.033 (T) 0.1 (T) >1 (-) 21 (-) >0.05
rs9264681 chr6:31240871 HLA-C [+964bp] C - 7 C vs. G 0.308 (C) 0.358 (C) <1 (-) 22 (-) >0.05
rs74568989 chr6:31275113 HLA-C [+35206bp] C - 8 T vs. C - 0.05 (T) <1 (-) 0 (-) >0.05
rs28367685 chr6:31271320 HLA-C [+31413bp] C - 11 A vs. G 0.167 (A) 0.233 (A) <1 (-) 11 (-) >0.05
rs2524093 chr6:31240180 HLA-C [+273bp] C - 10 A vs. C - 0.225 (A) >1 (-) 0 (-) >0.05
rs9501364 chr6:31217026 HLA-C [-19500bp] C - 8 A vs. G - 0.067 (A) >1 (-) 0 (-) >0.05
rs2524091 chr6:31240293 HLA-C [+386bp] C - 11 T vs. C 0.392 (C) 0.233 (C) <1 (-) 0 (-) >0.05
rs1793889 chr6:31222181 HLA-C [-14345bp] C - 4 A vs. G - - <1 (-) 6 (-) >0.05
rs146219160 chr6:31271478 HLA-C [+31571bp] C - 8 T vs. C - - >1 (-) 0 (-) >0.05
rs12665166 chr6:31208242 HLA-C [-28284bp] C - 12 T vs. C 0.158 (T) 0.075 (T) >1 (-) 12 (-) >0.05
rs2394961 chr6:31237027 HLA-C C - 3 T vs. C 0.4 (C) 0.25 (C) <1 (-) 0 (-) >0.05
rs2394960 chr6:31237017 HLA-C C - 3 T vs. C - - <1 (-) 0 (-) >0.05
rs114985235 chr6:31269693 HLA-C [+29786bp] C - 12 T vs. C - 0.158 (C) >1 (-) 1 (-) >0.05
rs116589426 chr6:31269694 HLA-C [+29787bp] C - 12 A vs. T - 0.158 (A) <1 (-) 1 (-) >0.05
rs17198965 chr6:31276223 HLA-C [+36316bp] C - 11 C vs. G - 0.158 (G) <1 (-) 0 (-) >0.05
rs2524123 chr6:31265314 HLA-C [+25407bp] C - 11 T vs. C 0.25 (C) 0.325 (C) >1 (-) 0 (-) >0.05
rs28367586 chr6:31249156 HLA-C [+9249bp] C - 12 T vs. C 0.083 (T) 0.242 (T) <1 (-) 19 (-) >0.05
rs12660183 chr6:31269323 HLA-C [+29416bp] C - 12 A vs. G - 0.1 (G) <1 (-) 0 (-) >0.05
rs143871426 chr6:31222479 HLA-C [-14047bp] C - 4 A vs. G - - >1 (-) 0 (-) >0.05
rs9264822 chr6:31270781 HLA-C [+30874bp] C - 12 C vs. G - - >1 (-) 0 (-) >0.05
rs2844620 chr6:31242151 HLA-C [+2244bp] C - 12 T vs. C 0.475 (T) 0.292 (C) <1 (-) 0 (-) >0.05
rs4332019 chr6:31213413 HLA-C [-23113bp] C - 11 T vs. G 0.192 (G) 0.092 (G) <1 (-) 1 (-) >0.05
rs3132477 chr6:31284121 HLA-B [-37528bp] C - 3 A vs. G 0.242 (G) 0.167 (G) <1 (-) 0 (-) >0.05
rs7750963 chr6:31271567 HLA-C [+31660bp] C - 11 A vs. G 0.35 (A) 0.208 (A) >1 (-) 0 (-) >0.05
rs1049281 chr6:31236567 HLA-C C - 3 T vs. C - - >1 (-) 0 (-) >0.05
rs28397301 chr6:31209451 HLA-C [-27075bp] C - 3 A vs. C 0.033 (A) - <1 (-) 11 (-) >0.05
rs2844611 chr6:31243979 HLA-C [+4072bp] C - 12 A vs. T 0.35 (T) 0.217 (T) <1 (-) 0 (-) >0.05
rs2844612 chr6:31243971 HLA-C [+4064bp] C - 12 A vs. G 0.35 (A) 0.217 (A) >1 (-) 0 (-) >0.05
rs141593722 chr6:31199951 HCG27 [+28206bp] C - 5 A vs. G - - <1 (-) 0 (-) >0.05
rs34718458 chr6:31277595 HLA-C [+37688bp] C - 10 C vs. G 0.125 (C) 0.25 (C) <1 (-) 0 (-) >0.05
rs9468947 chr6:31278864 HLA-C [+38957bp] C - 8 T vs. C - - <1 (-) 0 (-) >0.05
rs28600230 chr6:31275742 HLA-C [+35835bp] C - 11 A vs. G 0.025 (A) 0.175 (A) <1 (-) 7 (-) >0.05
rs9264733 chr6:31244214 HLA-C [+4307bp] C - 12 C vs. G 0.292 (C) 0.308 (C) >1 (-) 39 (-) >0.05
rs77717244 chr6:31263738 HLA-C [+23831bp] C - 10 A vs. G 0.025 (G) 0.092 (G) >1 (-) 0 (-) >0.05
rs3132483 chr6:31243414 HLA-C [+3507bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs114751866 chr6:31210018 HLA-C [-26508bp] C - 12 A vs. G 0.05 (A) 0.05 (A) >1 (-) 0 (-) >0.05
rs9264596 chr6:31237230 HLA-C C - 3 A vs. G 0.45 (A) 0.258 (A) >1 (-) 8 (-) >0.05
rs6930376 chr6:31242817 HLA-C [+2910bp] C - 12 A vs. T 0.483 (A) 0.358 (T) >1 (-) 4 (-) >0.05
rs12529015 chr6:31248262 HLA-C [+8355bp] C - 12 A vs. G 0.017 (A) 0.15 (A) <1 (-) 23 (-) >0.05

Association studies for this region [+]