HLA-C, chr6:31236526-31239907 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2853923 chr6:31265737 HLA-C [+25830bp] All: C 103,235 14 A vs. G 0.492 (A) 0.442 (A) 1.07 (1.04-1.11) 0 (0-47) 9.90e-06
Meta_image?name=rs2853923

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2853943 chr6:31247871 HLA-C [+7964bp] C - 12 T vs. C 0.242 (C) 0.333 (C) >1 (-) 0 (-) >0.05
rs9368669 chr6:31248493 HLA-C [+8586bp] C - 12 T vs. C - - >1 (-) 23 (-) >0.05
rs9380234 chr6:31248568 HLA-C [+8661bp] C - 12 A vs. G 0.025 (A) 0.15 (A) <1 (-) 23 (-) >0.05
rs2524068 chr6:31245061 HLA-C [+5154bp] C - 12 T vs. G 0.183 (T) 0.092 (T) >1 (-) 6 (-) >0.05
rs56356836 chr6:31247267 HLA-C [+7360bp] C - 12 T vs. C 0.025 (T) 0.15 (T) <1 (-) 23 (-) >0.05
rs3132484 chr6:31243410 HLA-C [+3503bp] C - 12 T vs. G 0.492 (G) 0.35 (T) <1 (-) 0 (-) >0.05
rs55891410 chr6:31219142 HLA-C [-17384bp] C - 8 A vs. T 0.05 (T) - <1 (-) 30 (-) >0.05
rs9368677 chr6:31272321 HLA-C [+32414bp] C - 10 A vs. G 0.05 (A) 0.175 (A) <1 (-) 0 (-) >0.05
rs3132476 chr6:31284344 HLA-B [-37305bp] C - 3 A vs. G 0.25 (G) 0.158 (G) <1 (-) 0 (-) >0.05
rs9391714 chr6:31245080 HLA-C [+5173bp] C - 12 A vs. G 0.017 (A) 0.15 (A) <1 (-) 24 (-) >0.05
rs9405016 chr6:31247998 HLA-C [+8091bp] C - 12 T vs. C - - >1 (-) 23 (-) >0.05
rs9357124 chr6:31273554 HLA-C [+33647bp] C - 11 A vs. C 0.05 (A) 0.175 (A) <1 (-) 0 (-) >0.05
rs28732107 chr6:31249576 HLA-C [+9669bp] C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs9264674 chr6:31239868 HLA-C C - 9 C vs. G 0.383 (G) 0.208 (G) <1 (-) 0 (-) >0.05
rs17192582 chr6:31275982 HLA-C [+36075bp] C - 11 A vs. T 0.033 (T) 0.158 (T) <1 (-) 0 (-) >0.05
rs3094690 chr6:31282639 HLA-B [-39010bp] C - 3 T vs. C 0.242 (T) 0.175 (T) >1 (-) 0 (-) >0.05
rs2844624 chr6:31232247 HLA-C [-4279bp] C - 9 T vs. C 0.333 (C) 0.108 (C) >1 (-) 17 (-) >0.05
rs9264984 chr6:31283224 HLA-B [-38425bp] C - 3 A vs. G 0.25 (G) 0.158 (G) <1 (-) 0 (-) >0.05
rs4361609 chr6:31240635 HLA-C [+728bp] C - 11 C vs. G 0.117 (C) 0.167 (C) <1 (-) 0 (-) >0.05
rs9264740 chr6:31244331 HLA-C [+4424bp] C - 12 T vs. C 0.317 (C) 0.308 (C) <1 (-) 39 (-) >0.05
rs114573401 chr6:31192383 HCG27 [+20638bp] C - 12 A vs. G 0.042 (G) 0.042 (G) <1 (-) 0 (-) >0.05
rs9461666 chr6:31207763 HLA-C [-28763bp] C - 12 T vs. G - - <1 (-) 18 (-) >0.05
rs1793893 chr6:31218416 HLA-C [-18110bp] C - 10 T vs. C 0.217 (C) - >1 (-) 0 (-) >0.05
rs3132485 chr6:31243389 HLA-C [+3482bp] C - 12 A vs. C 0.492 (C) 0.375 (A) <1 (-) 0 (-) >0.05
rs2524094 chr6:31240041 HLA-C [+134bp] C - 10 T vs. C 0.475 (C) 0.275 (C) <1 (-) 0 (-) >0.05
rs9501556 chr6:31231268 HLA-C [-5258bp] C - 4 A vs. G - - <1 (-) 0 (-) >0.05
rs9391715 chr6:31245214 HLA-C [+5307bp] C - 12 T vs. C 0.092 (C) 0.233 (C) >1 (-) 15 (-) >0.05
rs6919310 chr6:31244716 HLA-C [+4809bp] C - 12 A vs. T 0.092 (T) 0.242 (T) >1 (-) 15 (-) >0.05
rs115338401 chr6:31221246 HLA-C [-15280bp] C - 4 T vs. C 0.033 (T) - >1 (-) 0 (-) >0.05
rs144605580 chr6:31198020 HCG27 [+26275bp] C - 4 A vs. C - - <1 (-) 35 (-) >0.05
rs3130696 chr6:31243884 HLA-C [+3977bp] C - 12 A vs. G 0.25 (A) 0.242 (A) <1 (-) 7 (-) >0.05
rs3869111 chr6:31190658 HCG27 [+18913bp] C - 12 T vs. C - 0.05 (T) >1 (-) 25 (-) >0.05
rs76765631 chr6:31270440 HLA-C [+30533bp] C - 10 T vs. C 0.025 (T) 0.05 (T) <1 (-) 0 (-) >0.05
rs116186675 chr6:31275251 HLA-C [+35344bp] C - 11 A vs. G 0.033 (A) 0.1 (A) >1 (-) 2 (-) >0.05
rs77729695 chr6:31270429 HLA-C [+30522bp] C - 10 C vs. G 0.025 (C) 0.05 (C) <1 (-) 0 (-) >0.05
rs12526246 chr6:31267060 HLA-C [+27153bp] C - 12 T vs. C 0.017 (T) 0.167 (T) <1 (-) 0 (-) >0.05
rs79424709 chr6:31271606 HLA-C [+31699bp] C - 10 A vs. G 0.025 (A) 0.108 (A) <1 (-) 0 (-) >0.05
rs2524089 chr6:31266522 HLA-C [+26615bp] C - 12 T vs. G 0.425 (G) 0.283 (G) <1 (-) 0 (-) >0.05
rs35647108 chr6:31274449 HLA-C [+34542bp] C - 11 A vs. C 0.125 (A) 0.142 (A) <1 (-) 10 (-) >0.05
rs3869115 chr6:31204694 HLA-C [-31832bp] C - 12 C vs. G 0.025 (G) 0.175 (G) <1 (-) 21 (-) >0.05
rs7761515 chr6:31273366 HLA-C [+33459bp] C - 10 A vs. C 0.075 (A) 0.267 (A) <1 (-) 8 (-) >0.05
rs7767581 chr6:31239855 HLA-C C - 9 C vs. G 0.383 (C) 0.208 (C) >1 (-) 0 (-) >0.05
rs112039377 chr6:31270035 HLA-C [+30128bp] C - 10 A vs. G 0.025 (A) 0.083 (A) <1 (-) 0 (-) >0.05
rs3873385 chr6:31269308 HLA-C [+29401bp] C - 12 T vs. C 0.167 (T) 0.283 (T) <1 (-) 0 (-) >0.05
rs2524070 chr6:31244520 HLA-C [+4613bp] C - 12 A vs. G 0.183 (A) 0.092 (A) >1 (-) 2 (-) >0.05
rs2524095 chr6:31266117 HLA-C [+26210bp] C - 12 A vs. C 0.425 (A) 0.283 (A) >1 (-) 0 (-) >0.05
rs75093065 chr6:31271025 HLA-C [+31118bp] C - 10 A vs. G 0.025 (G) 0.092 (G) >1 (-) 0 (-) >0.05
rs112757900 chr6:31271458 HLA-C [+31551bp] C - 8 T vs. C - - >1 (-) 0 (-) >0.05
rs2308525 chr6:31239827 HLA-C C - 9 T vs. C 0.375 (C) 0.225 (C) <1 (-) 0 (-) >0.05
rs1050451 chr6:31239802 HLA-C C - 9 C vs. G 0.425 (C) 0.217 (C) >1 (-) 0 (-) >0.05

Association studies for this region [+]