HLA-C, chr6:31236526-31239907 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2853923 chr6:31265737 HLA-C [+25830bp] All: C 103,235 14 A vs. G 0.492 (A) 0.442 (A) 1.07 (1.04-1.11) 0 (0-47) 9.90e-06
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs55971236 chr6:31216973 HLA-C [-19553bp] C - 6 A vs. C - - >1 (-) 54 (-) >0.05
rs1050343 chr6:31238232 HLA-C C - 3 A vs. G - - <1 (-) 0 (-) >0.05
rs28744280 chr6:31216170 HLA-C [-20356bp] C - 9 A vs. G - - <1 (-) 0 (-) >0.05
rs6927214 chr6:31217076 HLA-C [-19450bp] C - 8 T vs. C 0.167 (C) - >1 (-) 0 (-) >0.05
rs28361014 chr6:31192093 HCG27 [+20348bp] C - 12 A vs. G 0.142 (G) 0.008 (G) >1 (-) 0 (-) >0.05
rs78344932 chr6:31216857 HLA-C [-19669bp] C - 6 A vs. G - - <1 (-) 54 (-) >0.05
rs28744277 chr6:31214804 HLA-C [-21722bp] C - 9 A vs. G 0.167 (G) 0.067 (T) >1 (-) 0 (-) >0.05
rs141899063 chr6:31201854 HCG27 [+30109bp] C - 10 T vs. C - - <1 (-) 0 (-) >0.05
rs2524141 chr6:31263662 HLA-C [+23755bp] C - 12 A vs. C 0.158 (A) 0.125 (A) <1 (-) 0 (-) >0.05
rs74556631 chr6:31241812 HLA-C [+1905bp] C - 4 T vs. G 0.025 (G) 0.092 (G) <1 (-) 0 (-) >0.05
rs28367686 chr6:31274790 HLA-C [+34883bp] C - 7 C vs. G - - <1 (-) 0 (-) >0.05
rs7762578 chr6:31207409 HLA-C [-29117bp] C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs35742578 chr6:31261645 HLA-C [+21738bp] C - 12 A vs. G 0.05 (A) 0.117 (A) >1 (-) 26 (-) >0.05
rs35391481 chr6:31190736 HCG27 [+18991bp] C - 11 A vs. C 0.158 (A) 0.083 (A) <1 (-) 9 (-) >0.05
rs9264668 chr6:31239622 HLA-C C - 3 A vs. C - - <1 (-) 37 (-) >0.05
rs2524069 chr6:31244789 HLA-C [+4882bp] C - 12 A vs. T 0.158 (T) - >1 (-) 0 (-) >0.05
rs2249742 chr6:31240721 HLA-C [+814bp] C - 11 T vs. C 0.4 (T) 0.5 (T) <1 (-) 0 (-) >0.05
rs2524162 chr6:31259750 HLA-C [+19843bp] C - 12 T vs. C 0.175 (T) 0.158 (T) <1 (-) 0 (-) >0.05
rs6927080 chr6:31201772 HCG27 [+30027bp] C - 12 C vs. G 0.417 (G) 0.467 (C) <1 (-) 11 (-) >0.05
rs73728438 chr6:31206768 HLA-C [-29758bp] C - 12 T vs. C 0.025 (T) - >1 (-) 0 (-) >0.05
rs116491762 chr6:31257393 HLA-C [+17486bp] C - 11 T vs. C 0.025 (C) - >1 (-) 0 (-) >0.05
rs9264936 chr6:31274257 HLA-C [+34350bp] C - 12 C vs. G 0.15 (C) - <1 (-) 0 (-) >0.05
rs1634781 chr6:31284347 HLA-B [-37302bp] C - 4 A vs. G 0.283 (G) 0.458 (A) <1 (-) 0 (-) >0.05
rs116196347 chr6:31259056 HLA-C [+19149bp] C - 11 C vs. G 0.033 (G) - >1 (-) 0 (-) >0.05
rs62399808 chr6:31196217 HCG27 [+24472bp] C - 11 A vs. T - - <1 (-) 0 (-) >0.05
rs10807087 chr6:31235751 HLA-C [-775bp] C - 8 T vs. C 0.05 (C) 0.158 (C) >1 (-) 11 (-) >0.05
rs9264809 chr6:31270636 HLA-C [+30729bp] C - 12 T vs. G 0.092 (G) - >1 (-) 0 (-) >0.05
rs41559915 chr6:31237275 HLA-C C - 8 A vs. G - - >1 (-) 0 (-) >0.05
rs9264841 chr6:31270994 HLA-C [+31087bp] C - 12 T vs. C 0.142 (C) - >1 (-) 0 (-) >0.05
rs9264840 chr6:31270984 HLA-C [+31077bp] C - 12 T vs. C 0.142 (C) - >1 (-) 0 (-) >0.05
rs114722623 chr6:31258336 HLA-C [+18429bp] C - 11 T vs. C 0.033 (T) - <1 (-) 0 (-) >0.05
rs142520922 chr6:31258402 HLA-C [+18495bp] C - 11 A vs. G - - <1 (-) 0 (-) >0.05
rs146912253 chr6:31258411 HLA-C [+18504bp] C - 11 A vs. G - - <1 (-) 0 (-) >0.05
rs9264888 chr6:31272122 HLA-C [+32215bp] C - 12 A vs. C 0.133 (C) 0.1 (C) >1 (-) 0 (-) >0.05
rs28361019 chr6:31198801 HCG27 [+27056bp] C - 12 T vs. C 0.142 (C) 0.017 (C) >1 (-) 0 (-) >0.05
rs4544954 chr6:31276109 HLA-C [+36202bp] C - 11 A vs. G 0.1 (A) 0.308 (A) <1 (-) 32 (-) >0.05
rs114555121 chr6:31258891 HLA-C [+18984bp] C - 11 C vs. G 0.033 (G) - >1 (-) 0 (-) >0.05
rs115181481 chr6:31256059 HLA-C [+16152bp] C - 11 A vs. T 0.033 (A) - <1 (-) 0 (-) >0.05
rs115595761 chr6:31256767 HLA-C [+16860bp] C - 11 T vs. G 0.025 (G) - >1 (-) 0 (-) >0.05
rs116311956 chr6:31256875 HLA-C [+16968bp] C - 11 T vs. C 0.025 (T) - <1 (-) 0 (-) >0.05
rs3094680 chr6:31243895 HLA-C [+3988bp] C - 12 T vs. C 0.442 (C) 0.467 (C) <1 (-) 0 (-) >0.05
rs114949074 chr6:31256936 HLA-C [+17029bp] C - 11 A vs. G 0.033 (A) - <1 (-) 0 (-) >0.05
rs114596856 chr6:31257524 HLA-C [+17617bp] C - 11 C vs. G 0.033 (G) - >1 (-) 0 (-) >0.05
rs116837597 chr6:31258689 HLA-C [+18782bp] C - 11 T vs. C 0.033 (T) - <1 (-) 0 (-) >0.05
rs115654548 chr6:31256532 HLA-C [+16625bp] C - 11 T vs. G 0.033 (G) - >1 (-) 0 (-) >0.05
rs118067083 chr6:31255827 HLA-C [+15920bp] C - 11 A vs. G - 0.017 (G) >1 (-) 0 (-) >0.05
rs115313279 chr6:31257650 HLA-C [+17743bp] C - 11 A vs. G 0.033 (A) - <1 (-) 0 (-) >0.05
rs114381246 chr6:31257855 HLA-C [+17948bp] C - 11 T vs. C 0.033 (T) 0.017 (T) <1 (-) 0 (-) >0.05
rs116746941 chr6:31257848 HLA-C [+17941bp] C - 11 T vs. C 0.033 (C) 0.033 (C) >1 (-) 0 (-) >0.05
rs2524090 chr6:31240823 HLA-C [+916bp] C - 12 A vs. C 0.167 (A) - <1 (-) 7 (-) >0.05

Association studies for this region [+]