HLA-C, chr6:31236526-31239907 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2853923 chr6:31265737 HLA-C [+25830bp] All: C 103,235 14 A vs. G 0.492 (A) 0.442 (A) 1.07 (1.04-1.11) 0 (0-47) 9.90e-06
Meta_image?name=rs2853923

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9368667 chr6:31232735 HLA-C [-3791bp] C - 7 T vs. C 0.058 (C) 0.15 (C) >1 (-) 25 (-) >0.05
rs115133626 chr6:31256577 HLA-C [+16670bp] C - 11 A vs. C 0.033 (C) - >1 (-) 0 (-) >0.05
rs115083165 chr6:31261433 HLA-C [+21526bp] C - 11 A vs. T 0.033 (A) 0.033 (A) <1 (-) 0 (-) >0.05
rs115309598 chr6:31254998 HLA-C [+15091bp] C - 11 A vs. G 0.025 (G) - >1 (-) 0 (-) >0.05
rs116455298 chr6:31254919 HLA-C [+15012bp] C - 11 A vs. G 0.033 (G) - >1 (-) 0 (-) >0.05
rs3873388 chr6:31275827 HLA-C [+35920bp] C - 11 A vs. G 0.233 (G) 0.458 (G) >1 (-) 0 (-) >0.05
rs114875410 chr6:31255338 HLA-C [+15431bp] C - 11 T vs. G 0.033 (G) - >1 (-) 0 (-) >0.05
rs115964138 chr6:31264512 HLA-C [+24605bp] C - 12 A vs. G 0.067 (A) 0.125 (A) >1 (-) 27 (-) >0.05
rs116334679 chr6:31264517 HLA-C [+24610bp] C - 12 T vs. C 0.067 (C) 0.125 (C) <1 (-) 27 (-) >0.05
rs2245822 chr6:31230800 HLA-C [-5726bp] C - 3 A vs. G 0.233 (A) 0.058 (A) <1 (-) 49 (-) >0.05
rs28361020 chr6:31199839 HCG27 [+28094bp] C - 12 T vs. C 0.142 (T) - <1 (-) 0 (-) >0.05
rs9264934 chr6:31274236 HLA-C [+34329bp] C - 12 C vs. G 0.142 (G) - >1 (-) 0 (-) >0.05
rs9264933 chr6:31274218 HLA-C [+34311bp] C - 12 T vs. C 0.142 (T) - <1 (-) 0 (-) >0.05
rs143740418 chr6:31253142 HLA-C [+13235bp] C - 11 A vs. G - - <1 (-) 0 (-) >0.05
rs72502550 chr6:31210085 HLA-C [-26441bp] C - 7 A vs. G - - >1 (-) 4 (-) >0.05
rs10484554 chr6:31274555 HLA-C [+34648bp] C - 11 T vs. C 0.083 (T) 0.042 (T) <1 (-) 27 (-) >0.05
rs28744274 chr6:31195031 HCG27 [+23286bp] C - 12 A vs. G 0.142 (A) - <1 (-) 0 (-) >0.05
chr6:31221874 chr6:31221874 HLA-C [-14652bp] C - 3 A vs. G - - <1 (-) 0 (-) >0.05
rs115973915 chr6:31263349 HLA-C [+23442bp] C - 12 A vs. C 0.058 (A) 0.117 (A) >1 (-) 9 (-) >0.05
rs2524065 chr6:31246324 HLA-C [+6417bp] C - 12 A vs. C - - >1 (-) 0 (-) >0.05
rs17192386 chr6:31256058 HLA-C [+16151bp] C - 12 T vs. G 0.008 (T) - <1 (-) 28 (-) >0.05
rs76324464 chr6:31221884 HLA-C [-14642bp] C - 3 A vs. C - 0.142 (A) >1 (-) 0 (-) >0.05
rs2853945 chr6:31247736 HLA-C [+7829bp] C - 12 T vs. C 0.158 (C) - >1 (-) 0 (-) >0.05
rs2844609 chr6:31247390 HLA-C [+7483bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs9264909 chr6:31272632 HLA-C [+32725bp] C - 12 C vs. G 0.125 (C) 0.075 (C) <1 (-) 0 (-) >0.05
rs2853942 chr6:31248169 HLA-C [+8262bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs1634745 chr6:31282949 HLA-B [-38700bp] C - 6 T vs. C 0.15 (T) - <1 (-) 0 (-) >0.05
rs2524067 chr6:31245821 HLA-C [+5914bp] C - 12 A vs. G 0.158 (G) - >1 (-) 0 (-) >0.05
rs727849 chr6:31281515 HLA-B [-40134bp] C - 6 A vs. G 0.15 (A) - <1 (-) 0 (-) >0.05
rs9264857 chr6:31271473 HLA-C [+31566bp] C - 12 A vs. C 0.15 (A) - <1 (-) 0 (-) >0.05
rs28397290 chr6:31197707 HCG27 [+25962bp] C - 11 T vs. G 0.042 (G) - >1 (-) 0 (-) >0.05
rs2853947 chr6:31245796 HLA-C [+5889bp] C - 12 T vs. C 0.158 (T) - <1 (-) 0 (-) >0.05
rs1634749 chr6:31281583 HLA-B [-40066bp] C - 6 A vs. T 0.15 (T) - >1 (-) 0 (-) >0.05
rs13200571 chr6:31271511 HLA-C [+31604bp] C - 11 A vs. C 0.075 (C) 0.058 (C) >1 (-) 28 (-) >0.05
rs117686116 chr6:31257800 HLA-C [+17893bp] C - 11 T vs. C - 0.017 (T) <1 (-) 0 (-) >0.05
rs16899214 chr6:31268377 HLA-C [+28470bp] C - 6 C vs. G 0.025 (C) - <1 (-) 57 (-) >0.05
rs9264945 chr6:31274627 HLA-C [+34720bp] C - 12 A vs. G 0.15 (A) - <1 (-) 0 (-) >0.05
rs2523599 chr6:31241092 HLA-C [+1185bp] C - 12 C vs. G 0.417 (C) 0.317 (G) >1 (-) 0 (-) >0.05
rs1634748 chr6:31281682 HLA-B [-39967bp] C - 6 T vs. C 0.15 (C) - >1 (-) 0 (-) >0.05
rs9264843 chr6:31271055 HLA-C [+31148bp] C - 12 C vs. G 0.15 (C) 0.092 (C) <1 (-) 0 (-) >0.05
rs114203148 chr6:31260364 HLA-C [+20457bp] C - 11 A vs. G 0.008 (G) - >1 (-) 0 (-) >0.05
rs9264793 chr6:31270285 HLA-C [+30378bp] C - 12 A vs. C 0.15 (A) - <1 (-) 0 (-) >0.05
rs9264867 chr6:31271585 HLA-C [+31678bp] C - 12 A vs. G 0.142 (A) 0.083 (A) <1 (-) 0 (-) >0.05
rs9264864 chr6:31271552 HLA-C [+31645bp] C - 12 T vs. C 0.125 (T) - <1 (-) 0 (-) >0.05
rs9264932 chr6:31274206 HLA-C [+34299bp] C - 12 A vs. T 0.142 (A) - <1 (-) 0 (-) >0.05
rs28361021 chr6:31204491 HLA-C [-32035bp] C - 12 T vs. C 0.15 (T) - <1 (-) 0 (-) >0.05
rs9264842 chr6:31271007 HLA-C [+31100bp] C - 12 T vs. C 0.142 (T) 0.075 (T) <1 (-) 0 (-) >0.05
rs9264868 chr6:31271601 HLA-C [+31694bp] C - 12 A vs. G 0.15 (G) 0.092 (G) >1 (-) 0 (-) >0.05
rs3869122 chr6:31209831 HLA-C [-26695bp] C - 12 A vs. T 0.133 (A) 0.067 (C) <1 (-) 0 (-) >0.05
rs9264852 chr6:31271310 HLA-C [+31403bp] C - 12 A vs. G 0.142 (G) 0.092 (G) >1 (-) 0 (-) >0.05

Association studies for this region [+]