HLA-C, chr6:31236526-31239907 +/- 50000 base pairs
View on:

Most significant meta-analysis in this region
Append your own data and create meta-analysis

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2853923 chr6:31265737 HLA-C [+25830bp] All: C 103,235 14 A vs. G 0.492 (A) 0.442 (A) 1.07 (1.04-1.11) 0 (0-47) 9.90e-06
Meta_image?name=rs2853923

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs7768019 chr6:31202575 HCG27 [+30830bp] C - 12 C vs. G 0.2 (G) 0.4 (G) <1 (-) 51 (-) >0.05
rs981536 chr6:31282254 HLA-B [-39395bp] C - 6 T vs. C 0.15 (C) - >1 (-) 0 (-) >0.05
rs3130700 chr6:31201248 HCG27 [+29503bp] C - 12 A vs. C - - <1 (-) 0 (-) >0.05
rs7752963 chr6:31200334 HCG27 [+28589bp] C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs28744273 chr6:31194690 HCG27 [+22945bp] C - 12 T vs. C 0.15 (T) - <1 (-) 0 (-) >0.05
rs9264792 chr6:31270273 HLA-C [+30366bp] C - 12 A vs. G 0.15 (A) 0.1 (A) <1 (-) 0 (-) >0.05
rs2394946 chr6:31221153 HLA-C [-15373bp] C - 4 A vs. G 0.417 (G) 0.375 (A) <1 (-) 0 (-) >0.05
rs2844613 chr6:31243846 HLA-C [+3939bp] C - 12 T vs. G 0.158 (T) - <1 (-) 1 (-) >0.05
rs9264862 chr6:31271527 HLA-C [+31620bp] C - 12 T vs. C 0.133 (T) 0.075 (T) <1 (-) 0 (-) >0.05
rs9264863 chr6:31271530 HLA-C [+31623bp] C - 12 A vs. G 0.133 (G) 0.033 (G) >1 (-) 0 (-) >0.05
rs78060161 chr6:31190737 HCG27 [+18992bp] C - 10 C vs. G - 0.067 (G) >1 (-) 0 (-) >0.05
rs1634738 chr6:31284067 HLA-B [-37582bp] C - 4 A vs. G 0.258 (A) 0.1 (A) >1 (-) 0 (-) >0.05
rs9380231 chr6:31235632 HLA-C [-894bp] C - 8 T vs. C 0.05 (C) 0.142 (C) >1 (-) 14 (-) >0.05
rs9264908 chr6:31272625 HLA-C [+32718bp] C - 12 T vs. G 0.125 (G) 0.075 (G) >1 (-) 0 (-) >0.05
rs9380239 chr6:31267646 HLA-C [+27739bp] C - 12 A vs. G 0.083 (A) 0.25 (A) <1 (-) 9 (-) >0.05
rs41315391 chr6:31192977 HCG27 [+21232bp] C - 12 T vs. C 0.042 (C) - >1 (-) 0 (-) >0.05
rs114634925 chr6:31262201 HLA-C [+22294bp] C - 11 C vs. G 0.033 (C) - <1 (-) 0 (-) >0.05
rs116708889 chr6:31262189 HLA-C [+22282bp] C - 11 T vs. G 0.033 (G) - >1 (-) 0 (-) >0.05
rs1634760 chr6:31275852 HLA-C [+35945bp] C - 12 T vs. C 0.15 (T) - <1 (-) 0 (-) >0.05
rs115228090 chr6:31264284 HLA-C [+24377bp] C - 12 T vs. C 0.075 (T) 0.092 (T) >1 (-) 23 (-) >0.05
rs115805679 chr6:31264288 HLA-C [+24381bp] C - 12 T vs. C 0.058 (C) 0.108 (C) <1 (-) 23 (-) >0.05
rs9264838 chr6:31270938 HLA-C [+31031bp] C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs115498811 chr6:31251362 HLA-C [+11455bp] C - 11 T vs. C 0.033 (C) - >1 (-) 0 (-) >0.05
rs2853926 chr6:31263051 HLA-C [+23144bp] C - 12 A vs. G 0.225 (G) 0.167 (G) >1 (-) 0 (-) >0.05
rs143354480 chr6:31250696 HLA-C [+10789bp] C - 11 A vs. C - - <1 (-) 0 (-) >0.05
rs112194255 chr6:31187523 HCG27 [+15778bp] C - 10 T vs. G - - <1 (-) 0 (-) >0.05
rs114720397 chr6:31250180 HLA-C [+10273bp] C - 11 T vs. G 0.017 (G) - >1 (-) 0 (-) >0.05
rs9264846 chr6:31271114 HLA-C [+31207bp] C - 12 C vs. G 0.15 (G) 0.092 (G) >1 (-) 0 (-) >0.05
rs115553935 chr6:31261039 HLA-C [+21132bp] C - 11 T vs. G 0.025 (G) - >1 (-) 0 (-) >0.05
rs116065050 chr6:31260863 HLA-C [+20956bp] C - 11 A vs. G 0.017 (G) - >1 (-) 0 (-) >0.05
rs2844614 chr6:31243540 HLA-C [+3633bp] C - 12 A vs. G 0.158 (A) - <1 (-) 2 (-) >0.05
rs9264844 chr6:31271070 HLA-C [+31163bp] C - 12 A vs. G 0.15 (G) 0.092 (G) >1 (-) 0 (-) >0.05
rs9264845 chr6:31271076 HLA-C [+31169bp] C - 12 C vs. G 0.15 (C) 0.092 (C) <1 (-) 0 (-) >0.05
rs7758178 chr6:31193966 HCG27 [+22221bp] C - 12 A vs. T 0.042 (T) - >1 (-) 0 (-) >0.05
rs28361011 chr6:31191665 HCG27 [+19920bp] C - 12 A vs. T - - >1 (-) 0 (-) >0.05
rs3915971 chr6:31269348 HLA-C [+29441bp] C - 12 A vs. G 0.217 (G) 0.25 (G) <1 (-) 0 (-) >0.05
rs9264855 chr6:31271366 HLA-C [+31459bp] C - 12 A vs. G 0.142 (G) 0.092 (G) >1 (-) 0 (-) >0.05
rs9264871 chr6:31271689 HLA-C [+31782bp] C - 12 A vs. G 0.15 (A) 0.092 (A) <1 (-) 0 (-) >0.05
rs9264872 chr6:31271694 HLA-C [+31787bp] C - 12 T vs. C 0.15 (T) 0.092 (T) <1 (-) 0 (-) >0.05
rs34187356 chr6:31261983 HLA-C [+22076bp] C - 12 T vs. C 0.058 (C) 0.117 (C) <1 (-) 27 (-) >0.05
rs2524073 chr6:31244235 HLA-C [+4328bp] C - 12 A vs. G 0.15 (A) 0.092 (A) <1 (-) 0 (-) >0.05
rs9264889 chr6:31272134 HLA-C [+32227bp] C - 12 T vs. C 0.142 (C) 0.092 (C) >1 (-) 0 (-) >0.05
rs9264920 chr6:31272853 HLA-C [+32946bp] C - 12 A vs. C 0.15 (A) 0.092 (A) <1 (-) 0 (-) >0.05
rs1634759 chr6:31275931 HLA-C [+36024bp] C - 12 T vs. C 0.142 (T) - <1 (-) 0 (-) >0.05
rs9264890 chr6:31272139 HLA-C [+32232bp] C - 12 A vs. T 0.142 (A) 0.075 (A) <1 (-) 0 (-) >0.05
rs117695831 chr6:31190284 HCG27 [+18539bp] C - 9 T vs. C - 0.067 (T) >1 (-) 8 (-) >0.05
rs17198734 chr6:31256026 HLA-C [+16119bp] C - 12 C vs. G 0.025 (G) - >1 (-) 28 (-) >0.05
rs2508007 chr6:31273550 HLA-C [+33643bp] C - 12 T vs. C 0.15 (T) 0.092 (T) <1 (-) 0 (-) >0.05
rs9264896 chr6:31272369 HLA-C [+32462bp] C - 12 A vs. G 0.142 (A) 0.092 (A) <1 (-) 0 (-) >0.05
rs9264882 chr6:31271876 HLA-C [+31969bp] C - 12 T vs. C 0.142 (T) 0.083 (T) <1 (-) 0 (-) >0.05

Association studies for this region [+]