HLA-C, chr6:31236526-31239907 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2853923 chr6:31265737 HLA-C [+25830bp] All: C 103,235 14 A vs. G 0.492 (A) 0.442 (A) 1.07 (1.04-1.11) 0 (0-47) 9.90e-06
Meta_image?name=rs2853923

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs115686299 chr6:31210463 HLA-C [-26063bp] C - 10 A vs. G 0.025 (A) 0.083 (A) <1 (-) 0 (-) >0.05
rs115835283 chr6:31257735 HLA-C [+17828bp] C - 11 T vs. G 0.033 (T) - <1 (-) 0 (-) >0.05
rs78489254 chr6:31262289 HLA-C [+22382bp] C - 3 T vs. C - 0.033 (T) >1 (-) 52 (-) >0.05
rs113831989 chr6:31191294 HCG27 [+19549bp] C - 12 T vs. C 0.15 (T) 0.075 (T) <1 (-) 6 (-) >0.05
rs28744272 chr6:31193906 HCG27 [+22161bp] C - 12 A vs. G 0.175 (G) - >1 (-) 0 (-) >0.05
rs7762513 chr6:31274000 HLA-C [+34093bp] C - 11 T vs. C 0.217 (T) 0.233 (T) >1 (-) 19 (-) >0.05
rs28361015 chr6:31193480 HCG27 [+21735bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs113565451 chr6:31190175 HCG27 [+18430bp] C - 12 T vs. C 0.158 (T) - <1 (-) 7 (-) >0.05
rs60795668 chr6:31253246 HLA-C [+13339bp] C - 12 C vs. G - - <1 (-) 0 (-) >0.05
rs28744270 chr6:31193698 HCG27 [+21953bp] C - 12 C vs. G 0.175 (C) - <1 (-) 0 (-) >0.05
rs12662527 chr6:31190897 HCG27 [+19152bp] C - 12 A vs. G 0.15 (A) 0.075 (A) <1 (-) 7 (-) >0.05
rs12662501 chr6:31190850 HCG27 [+19105bp] C - 12 T vs. C 0.158 (T) 0.075 (T) <1 (-) 7 (-) >0.05
rs9263981 chr6:31189382 HCG27 [+17637bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs28367678 chr6:31269282 HLA-C [+29375bp] C - 5 A vs. G - - <1 (-) 0 (-) >0.05
rs149837246 chr6:31202189 HCG27 [+30444bp] C - 10 T vs. C - - <1 (-) 0 (-) >0.05
rs73728468 chr6:31220425 HLA-C [-16101bp] C - 5 A vs. G - - >1 (-) 54 (-) >0.05
rs62399809 chr6:31197914 HCG27 [+26169bp] C - 7 C vs. G - - >1 (-) 0 (-) >0.05
rs9263994 chr6:31192952 HCG27 [+21207bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs73728467 chr6:31220309 HLA-C [-16217bp] C - 5 A vs. G - - >1 (-) 54 (-) >0.05
rs79860141 chr6:31210599 HLA-C [-25927bp] C - 10 A vs. C 0.025 (A) 0.092 (A) <1 (-) 0 (-) >0.05
rs28361016 chr6:31194240 HCG27 [+22495bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs80227257 chr6:31211106 HLA-C [-25420bp] C - 10 T vs. C 0.025 (C) 0.1 (C) >1 (-) 0 (-) >0.05
rs9263989 chr6:31191380 HCG27 [+19635bp] C - 12 A vs. G 0.017 (A) 0.05 (A) >1 (-) 0 (-) >0.05
rs76977405 chr6:31211064 HLA-C [-25462bp] C - 10 T vs. G 0.025 (G) 0.092 (G) >1 (-) 0 (-) >0.05
rs79433188 chr6:31211200 HLA-C [-25326bp] C - 10 A vs. G - 0.092 (G) >1 (-) 0 (-) >0.05
rs113196314 chr6:31210946 HLA-C [-25580bp] C - 10 A vs. T 0.025 (A) 0.1 (A) <1 (-) 0 (-) >0.05
rs28361030 chr6:31220274 HLA-C [-16252bp] C - 6 A vs. G 0.167 (A) - <1 (-) 0 (-) >0.05
rs77582287 chr6:31210876 HLA-C [-25650bp] C - 10 T vs. C 0.025 (C) 0.092 (C) >1 (-) 0 (-) >0.05
rs113752692 chr6:31203689 HCG27 [+31944bp] C - 10 A vs. G 0.017 (G) 0.083 (G) >1 (-) 0 (-) >0.05
rs73728472 chr6:31221900 HLA-C [-14626bp] C - 3 T vs. C - - <1 (-) 73 (-) >0.05
rs145021772 chr6:31189460 HCG27 [+17715bp] C - 12 T vs. C - - <1 (-) 4 (-) >0.05
rs9264490 chr6:31232578 HLA-C [-3948bp] C - 6 A vs. G 0.233 (G) - >1 (-) 37 (-) >0.05
rs35588998 chr6:31259870 HLA-C [+19963bp] C - 12 A vs. G - - >1 (-) 31 (-) >0.05
rs114500903 chr6:31259869 HLA-C [+19962bp] C - 12 T vs. C 0.067 (C) 0.117 (C) <1 (-) 31 (-) >0.05
rs28361027 chr6:31213744 HLA-C [-22782bp] C - 9 A vs. T 0.15 (A) 0.125 (A) <1 (-) 0 (-) >0.05
rs78830524 chr6:31213143 HLA-C [-23383bp] C - 10 T vs. G - 0.092 (T) <1 (-) 0 (-) >0.05
rs77058242 chr6:31209820 HLA-C [-26706bp] C - 10 A vs. T 0.025 (A) 0.108 (A) <1 (-) 0 (-) >0.05
rs2253491 chr6:31249217 HLA-C [+9310bp] C - 12 A vs. G - - <1 (-) 31 (-) >0.05
rs2853958 chr6:31233074 HLA-C [-3452bp] C - 6 T vs. G 0.233 (T) 0.05 (T) <1 (-) 37 (-) >0.05
rs78426493 chr6:31209458 HLA-C [-27068bp] C - 10 T vs. C 0.025 (T) 0.1 (T) <1 (-) 0 (-) >0.05
rs34341880 chr6:31247717 HLA-C [+7810bp] C - 6 T vs. C - - <1 (-) 0 (-) >0.05
rs382289 chr6:31283470 HLA-B [-38179bp] C - 5 T vs. C 0.15 (C) - >1 (-) 0 (-) >0.05
rs2894207 chr6:31263751 HLA-C [+23844bp] C - 12 T vs. C 0.15 (C) 0.192 (C) <1 (-) 0 (-) >0.05
rs9468925 chr6:31258837 HLA-C [+18930bp] C - 12 A vs. G 0.358 (A) 0.433 (A) <1 (-) 22 (-) >0.05
rs78716475 chr6:31208274 HLA-C [-28252bp] C - 10 T vs. C - 0.092 (T) <1 (-) 0 (-) >0.05
rs77338145 chr6:31208841 HLA-C [-27685bp] C - 10 A vs. G 0.025 (A) 0.092 (A) <1 (-) 0 (-) >0.05
rs79575717 chr6:31209193 HLA-C [-27333bp] C - 10 A vs. G - 0.108 (A) <1 (-) 0 (-) >0.05
rs2395471 chr6:31240692 HLA-C [+785bp] C - 11 A vs. G 0.333 (A) 0.45 (A) >1 (-) 0 (-) >0.05
rs6932396 chr6:31208360 HLA-C [-28166bp] C - 12 A vs. C 0.167 (C) - >1 (-) 0 (-) >0.05
rs79578955 chr6:31209035 HLA-C [-27491bp] C - 10 A vs. C - 0.1 (C) >1 (-) 0 (-) >0.05

Association studies for this region [+]