HLA-C, chr6:31236526-31239907 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2853923 chr6:31265737 HLA-C [+25830bp] All: C 103,235 14 A vs. G 0.492 (A) 0.442 (A) 1.07 (1.04-1.11) 0 (0-47) 9.90e-06
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs3873386 chr6:31273745 HLA-C [+33838bp] C - 11 T vs. C 0.35 (C) 0.358 (C) <1 (-) 18 (-) >0.05
rs17191496 chr6:31221186 HLA-C [-15340bp] C - 5 A vs. T - - >1 (-) 52 (-) >0.05
rs9264954 chr6:31275395 HLA-C [+35488bp] C - 12 A vs. G 0.133 (A) - <1 (-) 0 (-) >0.05
rs1639113 chr6:31221503 HLA-C [-15023bp] C - 4 A vs. G 0.133 (A) 0.067 (A) >1 (-) 0 (-) >0.05
rs2524057 chr6:31251895 HLA-C [+11988bp] C - 12 A vs. G 0.217 (G) 0.208 (G) <1 (-) 31 (-) >0.05
rs76259659 chr6:31215021 HLA-C [-21505bp] C - 6 A vs. G 0.025 (A) 0.075 (A) <1 (-) 0 (-) >0.05
rs2524049 chr6:31255953 HLA-C [+16046bp] C - 12 C vs. G 0.217 (G) 0.217 (G) <1 (-) 32 (-) >0.05
rs17191517 chr6:31221349 HLA-C [-15177bp] C - 5 T vs. G - - >1 (-) 52 (-) >0.05
rs77626638 chr6:31211340 HLA-C [-25186bp] C - 7 T vs. C 0.025 (C) 0.1 (C) >1 (-) 0 (-) >0.05
rs28732113 chr6:31263475 HLA-C [+23568bp] C - 12 T vs. G 0.1 (G) 0.092 (G) >1 (-) 8 (-) >0.05
rs9264955 chr6:31275583 HLA-C [+35676bp] C - 12 T vs. C 0.133 (T) - <1 (-) 0 (-) >0.05
rs4406273 chr6:31266090 HLA-C [+26183bp] C - 12 A vs. G 0.058 (A) - <1 (-) 3 (-) >0.05
rs28732109 chr6:31263297 HLA-C [+23390bp] C - 12 A vs. G 0.083 (A) 0.075 (A) <1 (-) 8 (-) >0.05
rs113390008 chr6:31207351 HLA-C [-29175bp] C - 12 A vs. G 0.167 (A) - <1 (-) 19 (-) >0.05
rs139393221 chr6:31216974 HLA-C [-19552bp] C - 4 A vs. G - - <1 (-) 0 (-) >0.05
rs17192358 chr6:31248742 HLA-C [+8835bp] C - 12 A vs. G 0.042 (G) - <1 (-) 0 (-) >0.05
rs2524039 chr6:31258226 HLA-C [+18319bp] C - 12 A vs. G 0.2 (G) 0.183 (G) <1 (-) 33 (-) >0.05
rs17191587 chr6:31221532 HLA-C [-14994bp] C - 5 T vs. C - - <1 (-) 52 (-) >0.05
rs28360997 chr6:31188654 HCG27 [+16909bp] C - 12 A vs. G 0.15 (A) 0.083 (A) <1 (-) 0 (-) >0.05
rs17197881 chr6:31221407 HLA-C [-15119bp] C - 5 T vs. C - - <1 (-) 52 (-) >0.05
rs2524082 chr6:31241761 HLA-C [+1854bp] C - 12 A vs. T 0.483 (A) 0.392 (T) <1 (-) 54 (-) >0.05
rs73728471 chr6:31221717 HLA-C [-14809bp] C - 5 T vs. C - - <1 (-) 52 (-) >0.05
rs9264672 chr6:31239766 HLA-C C - 10 T vs. C 0.142 (T) 0.083 (T) <1 (-) 4 (-) >0.05
rs2524044 chr6:31256753 HLA-C [+16846bp] C - 12 T vs. G 0.217 (G) 0.208 (G) <1 (-) 32 (-) >0.05
rs114475699 chr6:31211201 HLA-C [-25325bp] C - 11 T vs. C 0.158 (C) 0.1 (C) <1 (-) 7 (-) >0.05
rs28367693 chr6:31282666 HLA-B [-38983bp] C - 3 A vs. G 0.042 (G) 0.075 (G) >1 (-) 0 (-) >0.05
rs7757622 chr6:31200764 HCG27 [+29019bp] C - 12 T vs. C 0.467 (C) 0.325 (T) >1 (-) 0 (-) >0.05
rs115628514 chr6:31275222 HLA-C [+35315bp] C - 5 A vs. C 0.025 (C) 0.017 (C) <1 (-) 60 (-) >0.05
rs12199223 chr6:31242731 HLA-C [+2824bp] C - 12 A vs. T 0.058 (A) 0.042 (A) <1 (-) 0 (-) >0.05
rs7766156 chr6:31249790 HLA-C [+9883bp] C - 12 C vs. G 0.208 (G) 0.15 (G) >1 (-) 0 (-) >0.05
rs17197965 chr6:31221591 HLA-C [-14935bp] C - 4 A vs. T - - <1 (-) 64 (-) >0.05
rs17197951 chr6:31221586 HLA-C [-14940bp] C - 4 T vs. C - - >1 (-) 64 (-) >0.05
rs4997405 chr6:31193211 HCG27 [+21466bp] C - 12 T vs. C 0.442 (C) 0.475 (T) <1 (-) 0 (-) >0.05
rs73407034 chr6:31221628 HLA-C [-14898bp] C - 4 A vs. G - - <1 (-) 64 (-) >0.05
rs17881458 chr6:31237237 HLA-C C - 3 A vs. G - - <1 (-) 45 (-) >0.05
rs28367583 chr6:31241481 HLA-C [+1574bp] C - 12 A vs. G 0.042 (A) - >1 (-) 0 (-) >0.05
rs28894985 chr6:31264234 HLA-C [+24327bp] C - 12 A vs. G 0.083 (A) 0.075 (A) <1 (-) 7 (-) >0.05
rs28894986 chr6:31264246 HLA-C [+24339bp] C - 12 T vs. C 0.083 (C) 0.075 (C) >1 (-) 7 (-) >0.05
rs28752768 chr6:31249852 HLA-C [+9945bp] C - 12 C vs. G 0.042 (G) - <1 (-) 0 (-) >0.05
rs28752769 chr6:31249873 HLA-C [+9966bp] C - 12 T vs. G 0.042 (G) - <1 (-) 0 (-) >0.05
rs6457375 chr6:31272612 HLA-C [+32705bp] C - 11 A vs. G 0.5 (G) 0.45 (A) <1 (-) 11 (-) >0.05
rs76343304 chr6:31262727 HLA-C [+22820bp] C - 12 T vs. C 0.083 (T) 0.175 (T) <1 (-) 0 (-) >0.05
rs9263980 chr6:31188397 HCG27 [+16652bp] C - 12 A vs. G 0.45 (A) 0.45 (G) >1 (-) 0 (-) >0.05
rs9468931 chr6:31264619 HLA-C [+24712bp] C - 12 A vs. T 0.083 (A) 0.083 (A) <1 (-) 7 (-) >0.05
rs9263978 chr6:31187568 HCG27 [+15823bp] C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs77171432 chr6:31217591 HLA-C [-18935bp] C - 4 T vs. C 0.025 (C) 0.092 (C) <1 (-) 0 (-) >0.05
rs28752770 chr6:31249978 HLA-C [+10071bp] C - 12 A vs. G 0.033 (A) 0.017 (A) >1 (-) 0 (-) >0.05
rs80353391 chr6:31213644 HLA-C [-22882bp] C - 7 A vs. C 0.025 (A) - <1 (-) 0 (-) >0.05
rs2256583 chr6:31258846 HLA-C [+18939bp] C - 12 T vs. C 0.217 (C) 0.208 (C) <1 (-) 29 (-) >0.05
rs2524146 chr6:31262783 HLA-C [+22876bp] C - 12 T vs. C 0.208 (C) 0.208 (C) <1 (-) 26 (-) >0.05

Association studies for this region [+]