HLA-DQA2, chr6:32709119-32714992 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs28986415 chr6:32755465 HLA-DQB2 [+24154bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs28986414 chr6:32755460 HLA-DQB2 [+24149bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs73734325 chr6:32685298 HLA-DQA2 [-23821bp] C - 10 A vs. T 0.042 (A) - >1 (-) 0 (-) >0.05
rs2858885 chr6:32699782 HLA-DQA2 [-9337bp] C - 11 T vs. C 0.325 (T) 0.258 (C) >1 (-) 17 (-) >0.05
rs28986368 chr6:32751942 HLA-DQB2 [+20631bp] C - 12 T vs. C 0.092 (T) - >1 (-) 0 (-) >0.05
rs28986369 chr6:32751946 HLA-DQB2 [+20635bp] C - 12 A vs. G 0.092 (G) - <1 (-) 0 (-) >0.05
rs9276211 chr6:32699963 HLA-DQA2 [-9156bp] C - 11 T vs. C - 0.15 (T) <1 (-) 10 (-) >0.05
rs9276178 chr6:32699080 HLA-DQA2 [-10039bp] C - 11 A vs. G 0.292 (A) 0.158 (A) <1 (-) 12 (-) >0.05
rs9276209 chr6:32699874 HLA-DQA2 [-9245bp] C - 11 A vs. G 0.317 (A) 0.175 (A) <1 (-) 10 (-) >0.05
rs3129737 chr6:32686317 HLA-DQA2 [-22802bp] C - 10 A vs. G 0.15 (G) 0.092 (G) >1 (-) 0 (-) >0.05
rs2856674 chr6:32659645 HLA-DQB1 [+23485bp] C - 6 A vs. G 0.1 (G) 0.033 (G) <1 (-) 0 (-) >0.05
rs9276206 chr6:32699817 HLA-DQA2 [-9302bp] C - 11 A vs. G 0.325 (G) 0.133 (G) >1 (-) 9 (-) >0.05
rs2647004 chr6:32659609 HLA-DQB1 [+23449bp] C - 6 T vs. C 0.1 (C) - <1 (-) 0 (-) >0.05
rs34408145 chr6:32755177 HLA-DQB2 [+23866bp] C - 11 T vs. C 0.05 (C) - >1 (-) 28 (-) >0.05
rs9275699 chr6:32688021 HLA-DQA2 [-21098bp] C - 11 T vs. G 0.2 (G) 0.075 (G) <1 (-) 0 (-) >0.05
rs9275779 chr6:32689782 HLA-DQA2 [-19337bp] C - 11 T vs. G 0.3 (G) 0.158 (G) >1 (-) 13 (-) >0.05
rs7775664 chr6:32724447 HLA-DQB2 C - 12 C vs. G 0.083 (C) - <1 (-) 0 (-) >0.05
rs9275729 chr6:32688728 HLA-DQA2 [-20391bp] C - 12 T vs. C 0.308 (C) 0.15 (C) >1 (-) 6 (-) >0.05
rs9276177 chr6:32699062 HLA-DQA2 [-10057bp] C - 11 A vs. T 0.292 (T) 0.158 (T) >1 (-) 11 (-) >0.05
rs28893528 chr6:32747661 HLA-DQB2 [+16350bp] C - 12 C vs. G 0.092 (G) 0.008 (G) <1 (-) 0 (-) >0.05
rs9275702 chr6:32688100 HLA-DQA2 [-21019bp] C - 11 T vs. G 0.2 (T) 0.092 (T) >1 (-) 0 (-) >0.05
rs9275767 chr6:32689414 HLA-DQA2 [-19705bp] C - 12 A vs. G 0.375 (A) 0.158 (A) <1 (-) 8 (-) >0.05
rs2227131 chr6:32697712 HLA-DQA2 [-11407bp] C - 11 A vs. T 0.3 (A) 0.175 (A) <1 (-) 8 (-) >0.05
rs2227130 chr6:32697716 HLA-DQA2 [-11403bp] C - 11 A vs. G 0.3 (G) 0.167 (G) >1 (-) 8 (-) >0.05
rs12664558 chr6:32758677 HLA-DOB [-21863bp] C - 12 A vs. G 0.092 (A) - >1 (-) 0 (-) >0.05
rs28986333 chr6:32747727 HLA-DQB2 [+16416bp] C - 12 A vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs9276390 chr6:32708254 HLA-DQA2 [-865bp] C - 11 A vs. G - - >1 (-) 21 (-) >0.05
rs2227127 chr6:32711782 HLA-DQA2 C - 11 A vs. G 0.35 (G) 0.342 (A) <1 (-) 9 (-) >0.05
rs2859066 chr6:32692311 HLA-DQA2 [-16808bp] C - 10 A vs. C 0.142 (C) 0.05 (C) >1 (-) 0 (-) >0.05
rs9275703 chr6:32688123 HLA-DQA2 [-20996bp] C - 12 T vs. C 0.3 (C) 0.167 (C) >1 (-) 6 (-) >0.05
rs3129738 chr6:32686591 HLA-DQA2 [-22528bp] C - 10 T vs. C 0.15 (T) - <1 (-) 0 (-) >0.05
rs7758736 chr6:32758394 HLA-DOB [-22146bp] C - 12 A vs. G 0.183 (A) - <1 (-) 0 (-) >0.05
rs9275705 chr6:32688143 HLA-DQA2 [-20976bp] C - 12 A vs. G 0.325 (G) 0.167 (G) >1 (-) 6 (-) >0.05
rs9275755 chr6:32689158 HLA-DQA2 [-19961bp] C - 12 A vs. G 0.308 (G) 0.175 (G) >1 (-) 11 (-) >0.05
rs2856726 chr6:32666721 HLA-DQB1 [+30561bp] C - 12 A vs. T 0.258 (T) 0.475 (T) >1 (-) 43 (-) >0.05
rs9275756 chr6:32689164 HLA-DQA2 [-19955bp] C - 12 A vs. G 0.317 (G) 0.158 (G) >1 (-) 11 (-) >0.05
rs9276223 chr6:32700488 HLA-DQA2 [-8631bp] C - 11 A vs. T - - >1 (-) 8 (-) >0.05
rs5016067 chr6:32719068 MIR3135B [+1312bp] C - 11 C vs. G 0.383 (C) 0.308 (G) >1 (-) 28 (-) >0.05
chr6:32731901 chr6:32731901 HLA-DQB2 [+590bp] C - 11 C vs. G - - <1 (-) 0 (-) >0.05
rs9276228 chr6:32700700 HLA-DQA2 [-8419bp] C - 11 T vs. C 0.3 (T) 0.167 (T) <1 (-) 8 (-) >0.05
rs12183007 chr6:32704630 HLA-DQA2 [-4489bp] C - 11 A vs. G 0.35 (G) 0.208 (A) <1 (-) 5 (-) >0.05
rs9276335 chr6:32705596 HLA-DQA2 [-3523bp] C - 11 A vs. G 0.333 (G) 0.258 (G) >1 (-) 10 (-) >0.05
rs28986331 chr6:32744892 HLA-DQB2 [+13581bp] C - 12 T vs. C 0.075 (T) - >1 (-) 0 (-) >0.05
rs3129733 chr6:32685456 HLA-DQA2 [-23663bp] C - 10 A vs. G 0.158 (G) 0.092 (G) >1 (-) 0 (-) >0.05
rs62398467 chr6:32764535 HLA-DOB [-16005bp] C - 12 T vs. C - - <1 (-) 29 (-) >0.05
rs9275730 chr6:32688730 HLA-DQA2 [-20389bp] C - 12 A vs. C 0.325 (A) 0.15 (A) <1 (-) 8 (-) >0.05
rs9275803 chr6:32690255 HLA-DQA2 [-18864bp] C - 11 T vs. C 0.317 (C) 0.192 (C) >1 (-) 7 (-) >0.05
rs9276222 chr6:32700450 HLA-DQA2 [-8669bp] C - 11 A vs. C - - <1 (-) 9 (-) >0.05
rs9276094 chr6:32696776 HLA-DQA2 [-12343bp] C - 10 A vs. G 0.317 (G) 0.158 (G) >1 (-) 21 (-) >0.05
rs28754557 chr6:32686479 HLA-DQA2 [-22640bp] C - 12 A vs. G - - >1 (-) 12 (-) >0.05

Association studies for this region [+]