HLA-DQA2, chr6:32709119-32714992 +/- 50000 base pairs
View on:

Most significant meta-analysis in this region
Append your own data and create meta-analysis

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
Meta_image?name=rs9275326

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275759 chr6:32689200 HLA-DQA2 [-19919bp] C - 12 A vs. C 0.317 (A) 0.158 (A) <1 (-) 12 (-) >0.05
rs28893544 chr6:32749984 HLA-DQB2 [+18673bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs9276557 chr6:32723614 HLA-DQB2 [-261bp] C - 12 T vs. C 0.075 (T) - <1 (-) 0 (-) >0.05
rs9275786 chr6:32689872 HLA-DQA2 [-19247bp] C - 11 A vs. G 0.317 (G) 0.158 (G) >1 (-) 13 (-) >0.05
rs28371306 chr6:32677751 HLA-DQA2 [-31368bp] C - 12 T vs. C 0.267 (C) 0.392 (C) >1 (-) 34 (-) >0.05
rs28986355 chr6:32751105 HLA-DQB2 [+19794bp] C - 12 A vs. G 0.092 (G) - <1 (-) 0 (-) >0.05
rs9276113 chr6:32697196 HLA-DQA2 [-11923bp] C - 10 T vs. C - - <1 (-) 19 (-) >0.05
chr6:32732142 chr6:32732142 HLA-DQB2 [+831bp] C - 9 C vs. G - - <1 (-) 0 (-) >0.05
rs28986422 chr6:32757724 HLA-DOB [-22816bp] C - 12 T vs. C 0.1 (C) - <1 (-) 0 (-) >0.05
rs28986421 chr6:32757598 HLA-DOB [-22942bp] C - 12 A vs. G 0.092 (G) - <1 (-) 0 (-) >0.05
rs12661326 chr6:32745435 HLA-DQB2 [+14124bp] C - 12 T vs. C 0.108 (T) - >1 (-) 0 (-) >0.05
rs9275911 chr6:32692391 HLA-DQA2 [-16728bp] C - 11 A vs. G 0.208 (G) 0.092 (G) <1 (-) 0 (-) >0.05
rs9275799 chr6:32690157 HLA-DQA2 [-18962bp] C - 11 A vs. G 0.15 (G) 0.008 (G) >1 (-) 0 (-) >0.05
rs12660559 chr6:32758774 HLA-DOB [-21766bp] C - 12 T vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs28893534 chr6:32749561 HLA-DQB2 [+18250bp] C - 12 T vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs28893526 chr6:32747331 HLA-DQB2 [+16020bp] C - 12 C vs. G 0.092 (G) - <1 (-) 0 (-) >0.05
rs13204139 chr6:32752685 HLA-DQB2 [+21374bp] C - 12 A vs. G 0.092 (A) - >1 (-) 0 (-) >0.05
rs2859099 chr6:32699515 HLA-DQA2 [-9604bp] C - 8 T vs. C - 0.058 (T) >1 (-) 0 (-) >0.05
rs2859121 chr6:32697122 HLA-DQA2 [-11997bp] C - 10 T vs. C 0.325 (T) 0.175 (T) <1 (-) 21 (-) >0.05
rs28371297 chr6:32677315 HLA-DQA2 [-31804bp] C - 12 T vs. C 0.267 (C) 0.392 (C) >1 (-) 35 (-) >0.05
rs28371298 chr6:32677321 HLA-DQA2 [-31798bp] C - 12 A vs. C 0.267 (C) 0.367 (C) >1 (-) 35 (-) >0.05
rs9275794 chr6:32690059 HLA-DQA2 [-19060bp] C - 11 A vs. G 0.308 (G) 0.158 (G) >1 (-) 12 (-) >0.05
rs28371328 chr6:32679216 HLA-DQA2 [-29903bp] C - 12 A vs. G 0.25 (A) 0.358 (A) <1 (-) 34 (-) >0.05
rs9275737 chr6:32688804 HLA-DQA2 [-20315bp] C - 12 T vs. C 0.3 (C) 0.158 (C) >1 (-) 6 (-) >0.05
rs9275736 chr6:32688798 HLA-DQA2 [-20321bp] C - 12 A vs. G 0.308 (G) 0.158 (G) >1 (-) 6 (-) >0.05
rs13203652 chr6:32752504 HLA-DQB2 [+21193bp] C - 12 T vs. C 0.1 (T) - >1 (-) 0 (-) >0.05
rs9276548 chr6:32722220 HLA-DQB2 [-1655bp] C - 11 T vs. C 0.15 (C) 0.067 (C) >1 (-) 10 (-) >0.05
rs13203642 chr6:32752477 HLA-DQB2 [+21166bp] C - 12 T vs. C 0.092 (T) - >1 (-) 0 (-) >0.05
rs2646996 chr6:32665741 HLA-DQB1 [+29581bp] C - 12 A vs. G 0.258 (G) 0.492 (G) >1 (-) 42 (-) >0.05
rs7773068 chr6:32706234 HLA-DQA2 [-2885bp] C - 11 A vs. G 0.292 (G) 0.125 (G) >1 (-) 22 (-) >0.05
rs9276245 chr6:32701271 HLA-DQA2 [-7848bp] C - 11 A vs. G 0.283 (A) - <1 (-) 7 (-) >0.05
rs9275817 chr6:32690492 HLA-DQA2 [-18627bp] C - 11 C vs. G 0.3 (G) 0.158 (G) >1 (-) 10 (-) >0.05
rs9276104 chr6:32696992 HLA-DQA2 [-12127bp] C - 10 A vs. G 0.292 (G) 0.175 (G) >1 (-) 19 (-) >0.05
rs35439528 chr6:32733823 HLA-DQB2 [+2512bp] C - 12 T vs. C 0.075 (T) 0.067 (T) <1 (-) 0 (-) >0.05
rs28371307 chr6:32677761 HLA-DQA2 [-31358bp] C - 12 A vs. G 0.275 (G) 0.392 (G) >1 (-) 34 (-) >0.05
rs28663585 chr6:32686462 HLA-DQA2 [-22657bp] C - 12 A vs. G - - <1 (-) 17 (-) >0.05
rs28371329 chr6:32679236 HLA-DQA2 [-29883bp] C - 12 A vs. G 0.267 (A) 0.375 (A) <1 (-) 34 (-) >0.05
rs9275793 chr6:32690027 HLA-DQA2 [-19092bp] C - 11 A vs. G 0.3 (G) 0.158 (G) >1 (-) 12 (-) >0.05
rs28986378 chr6:32752242 HLA-DQB2 [+20931bp] C - 12 A vs. C 0.092 (A) - >1 (-) 0 (-) >0.05
rs9276237 chr6:32701001 HLA-DQA2 [-8118bp] C - 11 T vs. C - - <1 (-) 4 (-) >0.05
rs9276247 chr6:32701313 HLA-DQA2 [-7806bp] C - 11 A vs. G - - <1 (-) 0 (-) >0.05
rs3998154 chr6:32685380 HLA-DQA2 [-23739bp] C - 12 A vs. G 0.383 (A) 0.317 (G) >1 (-) 25 (-) >0.05
rs13198307 chr6:32756486 HLA-DOB [-24054bp] C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs13197975 chr6:32756480 HLA-DOB [-24060bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs9275741 chr6:32688872 HLA-DQA2 [-20247bp] C - 11 A vs. G - - >1 (-) 0 (-) >0.05
rs28371321 chr6:32678894 HLA-DQA2 [-30225bp] C - 12 A vs. T 0.25 (A) 0.392 (A) <1 (-) 34 (-) >0.05
rs17581326 chr6:32678753 HLA-DQA2 [-30366bp] C - 12 A vs. G 0.267 (G) 0.383 (G) >1 (-) 34 (-) >0.05
rs28371318 chr6:32678740 HLA-DQA2 [-30379bp] C - 12 A vs. G 0.267 (G) 0.383 (G) >1 (-) 34 (-) >0.05
rs28893557 chr6:32750859 HLA-DQB2 [+19548bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs28893558 chr6:32750865 HLA-DQB2 [+19554bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05

Association studies for this region [+]