HLA-DQA2, chr6:32709119-32714992 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9276097 chr6:32696849 HLA-DQA2 [-12270bp] C - 10 T vs. C 0.292 (T) 0.167 (T) <1 (-) 20 (-) >0.05
rs28371320 chr6:32678877 HLA-DQA2 [-30242bp] C - 12 T vs. C 0.267 (C) 0.383 (C) >1 (-) 34 (-) >0.05
rs9276232 chr6:32700762 HLA-DQA2 [-8357bp] C - 11 A vs. G 0.158 (A) - <1 (-) 0 (-) >0.05
rs13201537 chr6:32756857 HLA-DOB [-23683bp] C - 12 A vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs9276087 chr6:32696689 HLA-DQA2 [-12430bp] C - 10 C vs. G 0.333 (G) 0.175 (G) >1 (-) 23 (-) >0.05
rs9276236 chr6:32700996 HLA-DQA2 [-8123bp] C - 11 T vs. C - - >1 (-) 4 (-) >0.05
rs2859092 chr6:32700658 HLA-DQA2 [-8461bp] C - 8 T vs. C - 0.058 (T) >1 (-) 0 (-) >0.05
rs17581404 chr6:32679518 HLA-DQA2 [-29601bp] C - 12 A vs. G 0.267 (G) 0.383 (G) >1 (-) 34 (-) >0.05
rs3104397 chr6:32685673 HLA-DQA2 [-23446bp] C - 10 A vs. G 0.15 (A) 0.092 (A) <1 (-) 0 (-) >0.05
rs5018343 chr6:32710119 HLA-DQA2 C - 11 A vs. T 0.3 (A) 0.15 (A) <1 (-) 15 (-) >0.05
rs1480383 chr6:32740856 HLA-DQB2 [+9545bp] C - 12 A vs. C 0.208 (C) 0.317 (C) >1 (-) 0 (-) >0.05
rs9276063 chr6:32696075 HLA-DQA2 [-13044bp] C - 10 C vs. G 0.308 (G) 0.167 (G) >1 (-) 20 (-) >0.05
rs28986423 chr6:32758843 HLA-DOB [-21697bp] C - 12 A vs. G 0.092 (A) - >1 (-) 0 (-) >0.05
rs28986356 chr6:32751185 HLA-DQB2 [+19874bp] C - 12 C vs. G 0.092 (C) - >1 (-) 0 (-) >0.05
rs2857181 chr6:32751236 HLA-DQB2 [+19925bp] C - 12 T vs. C 0.292 (C) 0.433 (C) <1 (-) 4 (-) >0.05
rs9276089 chr6:32696703 HLA-DQA2 [-12416bp] C - 10 A vs. G 0.333 (G) 0.175 (G) >1 (-) 22 (-) >0.05
rs9275738 chr6:32688839 HLA-DQA2 [-20280bp] C - 11 T vs. C 0.2 (T) 0.092 (T) >1 (-) 0 (-) >0.05
rs28893562 chr6:32755918 HLA-DQB2 [+24607bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs763027 chr6:32691709 HLA-DQA2 [-17410bp] C - 11 A vs. T 0.342 (A) 0.317 (T) >1 (-) 13 (-) >0.05
rs13198109 chr6:32756575 HLA-DOB [-23965bp] C - 12 A vs. G 0.083 (G) 0.008 (G) <1 (-) 0 (-) >0.05
rs28371292 chr6:32676299 HLA-DQA2 [-32820bp] C - 12 T vs. C 0.258 (C) 0.367 (C) >1 (-) 35 (-) >0.05
rs28986358 chr6:32751228 HLA-DQB2 [+19917bp] C - 12 A vs. T 0.092 (T) - <1 (-) 0 (-) >0.05
rs6901084 chr6:32736936 HLA-DQB2 [+5625bp] C - 11 T vs. C 0.35 (T) 0.242 (C) <1 (-) 25 (-) >0.05
rs2157081 chr6:32761776 HLA-DOB [-18764bp] C - 12 A vs. G 0.392 (G) 0.25 (G) >1 (-) 8 (-) >0.05
rs13197854 chr6:32756385 HLA-DOB [-24155bp] C - 12 A vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs28986367 chr6:32751800 HLA-DQB2 [+20489bp] C - 12 T vs. C 0.092 (T) - >1 (-) 0 (-) >0.05
rs12183009 chr6:32704677 HLA-DQA2 [-4442bp] C - 11 C vs. G 0.35 (G) 0.217 (C) <1 (-) 10 (-) >0.05
rs28986357 chr6:32751192 HLA-DQB2 [+19881bp] C - 12 A vs. G 0.092 (A) - >1 (-) 0 (-) >0.05
rs13197727 chr6:32756292 HLA-DOB [-24248bp] C - 12 A vs. G 0.092 (G) - <1 (-) 0 (-) >0.05
rs7757475 chr6:32724499 HLA-DQB2 C - 12 T vs. C 0.083 (C) - >1 (-) 0 (-) >0.05
rs2859101 chr6:32699442 HLA-DQA2 [-9677bp] C - 11 T vs. C 0.358 (C) 0.308 (T) <1 (-) 26 (-) >0.05
rs28986359 chr6:32751349 HLA-DQB2 [+20038bp] C - 12 C vs. G 0.092 (C) - >1 (-) 0 (-) >0.05
rs28986370 chr6:32751960 HLA-DQB2 [+20649bp] C - 12 A vs. G 0.092 (A) - >1 (-) 0 (-) >0.05
rs28986371 chr6:32752006 HLA-DQB2 [+20695bp] C - 12 T vs. C 0.092 (T) - >1 (-) 0 (-) >0.05
rs4403295 chr6:32710010 HLA-DQA2 C - 11 T vs. G 0.333 (T) 0.092 (T) <1 (-) 0 (-) >0.05
rs28986360 chr6:32751370 HLA-DQB2 [+20059bp] C - 12 A vs. C 0.092 (A) - >1 (-) 0 (-) >0.05
rs17429127 chr6:32751614 HLA-DQB2 [+20303bp] C - 12 C vs. G 0.092 (C) - >1 (-) 0 (-) >0.05
rs28986362 chr6:32751451 HLA-DQB2 [+20140bp] C - 12 C vs. G 0.092 (G) - <1 (-) 0 (-) >0.05
rs28986363 chr6:32751555 HLA-DQB2 [+20244bp] C - 12 A vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs9276623 chr6:32743640 HLA-DQB2 [+12329bp] C - 12 A vs. G 0.192 (A) - <1 (-) 0 (-) >0.05
rs28371293 chr6:32677099 HLA-DQA2 [-32020bp] C - 11 A vs. T 0.267 (A) 0.383 (A) <1 (-) 39 (-) >0.05
rs17212650 chr6:32674869 HLA-DQA2 [-34250bp] C - 12 T vs. C 0.267 (T) 0.4 (T) <1 (-) 35 (-) >0.05
rs2859055 chr6:32694688 HLA-DQA2 [-14431bp] C - 10 A vs. G 0.35 (A) 0.333 (G) >1 (-) 24 (-) >0.05
rs28986373 chr6:32752150 HLA-DQB2 [+20839bp] C - 12 A vs. C 0.092 (A) - >1 (-) 0 (-) >0.05
rs28986379 chr6:32752357 HLA-DQB2 [+21046bp] C - 12 T vs. G 0.092 (T) - >1 (-) 0 (-) >0.05
rs28986372 chr6:32752130 HLA-DQB2 [+20819bp] C - 12 A vs. T 0.092 (T) - <1 (-) 0 (-) >0.05
rs9276161 chr6:32698439 HLA-DQA2 [-10680bp] C - 11 A vs. G 0.15 (A) 0.033 (A) <1 (-) 0 (-) >0.05
rs28986420 chr6:32757468 HLA-DOB [-23072bp] C - 12 T vs. C 0.092 (T) - >1 (-) 0 (-) >0.05
rs28986416 chr6:32755506 HLA-DQB2 [+24195bp] C - 12 C vs. G - - <1 (-) 0 (-) >0.05
rs28371317 chr6:32678634 HLA-DQA2 [-30485bp] C - 12 T vs. C 0.242 (C) 0.383 (C) >1 (-) 34 (-) >0.05

Association studies for this region [+]