HLA-DQA2, chr6:32709119-32714992 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2859120 chr6:32697293 HLA-DQA2 [-11826bp] C - 10 T vs. G - - <1 (-) 24 (-) >0.05
rs13195319 chr6:32686266 HLA-DQA2 [-22853bp] C - 11 A vs. G 0.35 (A) 0.325 (G) >1 (-) 26 (-) >0.05
rs9275801 chr6:32690208 HLA-DQA2 [-18911bp] C - 11 T vs. C 0.3 (T) 0.15 (T) <1 (-) 9 (-) >0.05
rs9275800 chr6:32690197 HLA-DQA2 [-18922bp] C - 11 T vs. C 0.308 (T) 0.15 (T) <1 (-) 9 (-) >0.05
rs9276145 chr6:32698026 HLA-DQA2 [-11093bp] C - 11 A vs. C 0.15 (C) - >1 (-) 0 (-) >0.05
rs2859100 chr6:32699479 HLA-DQA2 [-9640bp] C - 11 C vs. G 0.358 (C) 0.325 (G) >1 (-) 26 (-) >0.05
rs9276064 chr6:32696157 HLA-DQA2 [-12962bp] C - 10 A vs. C 0.308 (A) 0.175 (A) <1 (-) 19 (-) >0.05
rs28755383 chr6:32676393 HLA-DQA2 [-32726bp] C - 12 C vs. G 0.275 (G) 0.383 (G) >1 (-) 35 (-) >0.05
rs28755384 chr6:32676398 HLA-DQA2 [-32721bp] C - 12 T vs. C 0.275 (C) 0.383 (C) >1 (-) 35 (-) >0.05
rs9276042 chr6:32695626 HLA-DQA2 [-13493bp] C - 10 T vs. C 0.308 (T) 0.142 (T) <1 (-) 20 (-) >0.05
rs9276071 chr6:32696354 HLA-DQA2 [-12765bp] C - 10 C vs. G 0.3 (C) 0.158 (C) <1 (-) 20 (-) >0.05
rs9276119 chr6:32697262 HLA-DQA2 [-11857bp] C - 10 A vs. G - - <1 (-) 17 (-) >0.05
rs9275811 chr6:32690380 HLA-DQA2 [-18739bp] C - 11 A vs. C 0.308 (C) 0.158 (C) >1 (-) 11 (-) >0.05
rs9276148 chr6:32698099 HLA-DQA2 [-11020bp] C - 10 A vs. G 0.325 (G) 0.158 (G) >1 (-) 14 (-) >0.05
rs9275832 chr6:32690818 HLA-DQA2 [-18301bp] C - 11 T vs. C 0.317 (C) 0.175 (C) >1 (-) 14 (-) >0.05
rs9276244 chr6:32701221 HLA-DQA2 [-7898bp] C - 11 A vs. G - - >1 (-) 3 (-) >0.05
rs17206392 chr6:32675171 HLA-DQA2 [-33948bp] C - 12 T vs. C 0.267 (T) 0.383 (T) <1 (-) 35 (-) >0.05
rs9276062 chr6:32696039 HLA-DQA2 [-13080bp] C - 10 A vs. T 0.3 (T) 0.158 (T) >1 (-) 20 (-) >0.05
rs9276158 chr6:32698391 HLA-DQA2 [-10728bp] C - 11 T vs. C 0.15 (C) 0.033 (C) >1 (-) 0 (-) >0.05
rs9275739 chr6:32688857 HLA-DQA2 [-20262bp] C - 12 T vs. G 0.308 (G) 0.158 (G) >1 (-) 10 (-) >0.05
rs13195585 chr6:32686264 HLA-DQA2 [-22855bp] C - 11 A vs. G 0.35 (G) 0.325 (A) <1 (-) 26 (-) >0.05
rs2858892 chr6:32693242 HLA-DQA2 [-15877bp] C - 11 A vs. G 0.35 (G) 0.35 (A) <1 (-) 15 (-) >0.05
rs9275789 chr6:32689925 HLA-DQA2 [-19194bp] C - 11 A vs. G 0.358 (A) 0.158 (A) <1 (-) 13 (-) >0.05
rs9275827 chr6:32690725 HLA-DQA2 [-18394bp] C - 11 T vs. C 0.317 (T) 0.133 (T) <1 (-) 13 (-) >0.05
rs9276107 chr6:32697100 HLA-DQA2 [-12019bp] C - 10 A vs. G 0.3 (A) 0.175 (A) <1 (-) 19 (-) >0.05
rs9276108 chr6:32697109 HLA-DQA2 [-12010bp] C - 10 A vs. G 0.333 (A) 0.175 (A) <1 (-) 19 (-) >0.05
rs28893548 chr6:32750217 HLA-DQB2 [+18906bp] C - 12 A vs. G 0.092 (A) - >1 (-) 0 (-) >0.05
rs9276068 chr6:32696239 HLA-DQA2 [-12880bp] C - 10 A vs. G 0.3 (A) 0.158 (A) <1 (-) 20 (-) >0.05
rs11759423 chr6:32730392 HLA-DQB2 C - 12 T vs. C 0.075 (T) - <1 (-) 0 (-) >0.05
rs28755391 chr6:32678002 HLA-DQA2 [-31117bp] C - 12 T vs. C 0.25 (T) 0.383 (T) <1 (-) 34 (-) >0.05
rs28986335 chr6:32748137 HLA-DQB2 [+16826bp] C - 12 A vs. T 0.092 (T) - <1 (-) 0 (-) >0.05
rs7751699 chr6:32698899 HLA-DQA2 [-10220bp] C - 11 A vs. G 0.3 (G) 0.142 (G) >1 (-) 24 (-) >0.05
rs9275826 chr6:32690713 HLA-DQA2 [-18406bp] C - 11 A vs. G 0.308 (A) 0.142 (A) <1 (-) 13 (-) >0.05
rs9276061 chr6:32695975 HLA-DQA2 [-13144bp] C - 10 T vs. G 0.308 (T) 0.158 (T) <1 (-) 20 (-) >0.05
rs17212818 chr6:32675449 HLA-DQA2 [-33670bp] C - 12 T vs. C 0.25 (C) 0.383 (C) >1 (-) 36 (-) >0.05
rs2859064 chr6:32692812 HLA-DQA2 [-16307bp] C - 11 T vs. C 0.35 (C) 0.325 (T) <1 (-) 13 (-) >0.05
rs9276058 chr6:32695904 HLA-DQA2 [-13215bp] C - 10 A vs. C 0.3 (A) 0.158 (A) <1 (-) 20 (-) >0.05
rs17615293 chr6:32679489 HLA-DQA2 [-29630bp] C - 12 A vs. C 0.267 (C) 0.367 (C) >1 (-) 34 (-) >0.05
rs28371315 chr6:32678388 HLA-DQA2 [-30731bp] C - 12 T vs. C 0.267 (C) 0.392 (C) >1 (-) 34 (-) >0.05
rs9276407 chr6:32710307 HLA-DQA2 C - 11 A vs. G 0.15 (A) 0.033 (A) <1 (-) 0 (-) >0.05
rs2894294 chr6:32760965 HLA-DOB [-19575bp] C - 12 A vs. G 0.392 (G) 0.258 (G) >1 (-) 13 (-) >0.05
rs17206343 chr6:32675032 HLA-DQA2 [-34087bp] C - 12 T vs. C 0.25 (T) 0.383 (T) <1 (-) 36 (-) >0.05
rs28371316 chr6:32678502 HLA-DQA2 [-30617bp] C - 12 A vs. G 0.258 (G) 0.375 (G) >1 (-) 34 (-) >0.05
rs9276056 chr6:32695828 HLA-DQA2 [-13291bp] C - 10 T vs. G 0.325 (T) 0.158 (T) <1 (-) 20 (-) >0.05
rs9276445 chr6:32715414 HLA-DQA2 [+422bp] C - 10 A vs. G - - >1 (-) 25 (-) >0.05
rs9275825 chr6:32690671 HLA-DQA2 [-18448bp] C - 11 T vs. C 0.342 (C) 0.15 (C) >1 (-) 12 (-) >0.05
rs2227126 chr6:32715773 HLA-DQA2 [+781bp] C - 11 T vs. C 0.425 (T) 0.233 (C) >1 (-) 29 (-) >0.05
rs28986334 chr6:32748021 HLA-DQB2 [+16710bp] C - 12 T vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs9276037 chr6:32695434 HLA-DQA2 [-13685bp] C - 10 A vs. G 0.317 (A) 0.158 (A) <1 (-) 23 (-) >0.05
rs9276392 chr6:32708338 HLA-DQA2 [-781bp] C - 11 T vs. C - - <1 (-) 20 (-) >0.05

Association studies for this region [+]