HLA-DQA2, chr6:32709119-32714992 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs3208181 chr6:32713030 HLA-DQA2 C - 10 T vs. C 0.342 (C) 0.283 (T) <1 (-) 27 (-) >0.05
rs9276036 chr6:32695432 HLA-DQA2 [-13687bp] C - 10 T vs. C 0.308 (C) 0.158 (C) >1 (-) 23 (-) >0.05
rs9275764 chr6:32689289 HLA-DQA2 [-19830bp] C - 11 T vs. C 0.158 (T) 0.067 (T) >1 (-) 0 (-) >0.05
rs9275824 chr6:32690664 HLA-DQA2 [-18455bp] C - 11 A vs. G 0.342 (A) 0.15 (A) <1 (-) 12 (-) >0.05
rs2859059 chr6:32693844 HLA-DQA2 [-15275bp] C - 4 A vs. G 0.225 (A) 0.475 (A) <1 (-) 63 (-) >0.05
rs28986412 chr6:32755327 HLA-DQB2 [+24016bp] C - 12 A vs. T 0.092 (T) - <1 (-) 0 (-) >0.05
rs28986413 chr6:32755375 HLA-DQB2 [+24064bp] C - 12 T vs. G 0.092 (G) - <1 (-) 0 (-) >0.05
rs28772312 chr6:32686596 HLA-DQA2 [-22523bp] C - 12 A vs. G - - <1 (-) 14 (-) >0.05
rs28371305 chr6:32677690 HLA-DQA2 [-31429bp] C - 12 T vs. G 0.275 (G) 0.392 (G) >1 (-) 35 (-) >0.05
rs28371323 chr6:32679059 HLA-DQA2 [-30060bp] C - 12 A vs. T 0.258 (A) 0.342 (A) <1 (-) 34 (-) >0.05
rs13217231 chr6:32748690 HLA-DQB2 [+17379bp] C - 12 T vs. C 0.092 (T) - >1 (-) 0 (-) >0.05
rs28986343 chr6:32748953 HLA-DQB2 [+17642bp] C - 12 T vs. C 0.092 (T) - >1 (-) 0 (-) >0.05
rs28986348 chr6:32749122 HLA-DQB2 [+17811bp] C - 12 T vs. C 0.092 (T) - >1 (-) 0 (-) >0.05
rs28986349 chr6:32749140 HLA-DQB2 [+17829bp] C - 12 A vs. G 0.092 (A) - >1 (-) 0 (-) >0.05
rs9276027 chr6:32695317 HLA-DQA2 [-13802bp] C - 10 T vs. C 0.3 (C) 0.175 (C) >1 (-) 21 (-) >0.05
rs9276067 chr6:32696238 HLA-DQA2 [-12881bp] C - 10 T vs. C 0.3 (C) 0.158 (C) >1 (-) 21 (-) >0.05
rs9275901 chr6:32692216 HLA-DQA2 [-16903bp] C - 11 T vs. C 0.3 (T) 0.158 (T) <1 (-) 14 (-) >0.05
rs9276038 chr6:32695437 HLA-DQA2 [-13682bp] C - 10 T vs. C 0.317 (T) 0.158 (T) <1 (-) 22 (-) >0.05
rs7753557 chr6:32727680 HLA-DQB2 C - 12 A vs. T 0.492 (A) 0.233 (A) >1 (-) 31 (-) >0.05
rs9276026 chr6:32695294 HLA-DQA2 [-13825bp] C - 10 T vs. C 0.3 (T) 0.175 (T) <1 (-) 22 (-) >0.05
rs17212657 chr6:32674903 HLA-DQA2 [-34216bp] C - 12 T vs. C 0.267 (C) 0.408 (C) >1 (-) 36 (-) >0.05
rs17581305 chr6:32677353 HLA-DQA2 [-31766bp] C - 12 A vs. G 0.225 (A) 0.367 (A) <1 (-) 35 (-) >0.05
rs2071800 chr6:32714143 HLA-DQA2 C - 11 A vs. G - - <1 (-) 19 (-) >0.05
rs9276712 chr6:32759252 HLA-DOB [-21288bp] C - 12 A vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs28986397 chr6:32754458 HLA-DQB2 [+23147bp] C - 12 T vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs9275989 chr6:32694211 HLA-DQA2 [-14908bp] C - 10 A vs. T 0.2 (A) 0.067 (A) >1 (-) 0 (-) >0.05
rs28986396 chr6:32754430 HLA-DQB2 [+23119bp] C - 12 A vs. G 0.092 (A) 0.008 (A) >1 (-) 0 (-) >0.05
rs10947339 chr6:32715301 HLA-DQA2 [+309bp] C - 11 C vs. G 0.425 (G) 0.242 (C) <1 (-) 27 (-) >0.05
rs28986395 chr6:32754388 HLA-DQB2 [+23077bp] C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs9276331 chr6:32705495 HLA-DQA2 [-3624bp] C - 11 T vs. C 0.492 (C) 0.192 (C) >1 (-) 12 (-) >0.05
rs17212720 chr6:32675207 HLA-DQA2 [-33912bp] C - 12 T vs. C 0.267 (T) 0.383 (T) <1 (-) 35 (-) >0.05
rs17219239 chr6:32675511 HLA-DQA2 [-33608bp] C - 12 C vs. G 0.258 (G) 0.383 (G) >1 (-) 35 (-) >0.05
rs2858889 chr6:32694319 HLA-DQA2 [-14800bp] C - 11 A vs. G 0.333 (G) 0.325 (A) <1 (-) 17 (-) >0.05
rs9276260 chr6:32701900 HLA-DQA2 [-7219bp] C - 11 A vs. G - - <1 (-) 2 (-) >0.05
rs17212832 chr6:32675497 HLA-DQA2 [-33622bp] C - 12 T vs. C 0.258 (C) 0.383 (C) >1 (-) 35 (-) >0.05
rs5021450 chr6:32707887 HLA-DQA2 [-1232bp] C - 11 T vs. G 0.5 (G) 0.175 (T) <1 (-) 6 (-) >0.05
rs17212881 chr6:32675709 HLA-DQA2 [-33410bp] C - 12 A vs. C 0.258 (C) 0.383 (C) >1 (-) 35 (-) >0.05
rs17212867 chr6:32675691 HLA-DQA2 [-33428bp] C - 12 A vs. G 0.258 (A) 0.383 (A) <1 (-) 35 (-) >0.05
rs9275862 chr6:32691411 HLA-DQA2 [-17708bp] C - 11 A vs. G 0.3 (G) - >1 (-) 15 (-) >0.05
rs12662462 chr6:32753433 HLA-DQB2 [+22122bp] C - 12 A vs. G 0.092 (A) - >1 (-) 0 (-) >0.05
rs7747838 chr6:32698589 HLA-DQA2 [-10530bp] C - 11 C vs. G 0.3 (C) 0.167 (C) <1 (-) 19 (-) >0.05
rs7767959 chr6:32698686 HLA-DQA2 [-10433bp] C - 11 A vs. T 0.292 (A) 0.142 (A) <1 (-) 24 (-) >0.05
rs12665315 chr6:32753403 HLA-DQB2 [+22092bp] C - 12 A vs. G 0.092 (G) - <1 (-) 0 (-) >0.05
rs2157080 chr6:32761826 HLA-DOB [-18714bp] C - 12 T vs. C 0.392 (T) 0.25 (T) <1 (-) 9 (-) >0.05
rs28893545 chr6:32750134 HLA-DQB2 [+18823bp] C - 12 A vs. C 0.092 (A) - >1 (-) 0 (-) >0.05
rs28893546 chr6:32750156 HLA-DQB2 [+18845bp] C - 12 A vs. G 0.092 (G) - <1 (-) 0 (-) >0.05
rs28415071 chr6:32720133 MIR3135B [+2377bp] C - 12 A vs. C 0.417 (A) 0.233 (C) >1 (-) 28 (-) >0.05
rs28772340 chr6:32692953 HLA-DQA2 [-16166bp] C - 11 T vs. C 0.35 (C) 0.292 (T) <1 (-) 12 (-) >0.05
rs28371330 chr6:32679283 HLA-DQA2 [-29836bp] C - 12 T vs. C 0.267 (T) 0.358 (T) <1 (-) 33 (-) >0.05
rs28893535 chr6:32749623 HLA-DQB2 [+18312bp] C - 12 T vs. G 0.092 (G) - <1 (-) 0 (-) >0.05

Association studies for this region [+]